| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,698,495 – 15,698,605 |
| Length | 110 |
| Max. P | 0.964531 |
| Location | 15,698,495 – 15,698,605 |
|---|---|
| Length | 110 |
| Sequences | 8 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 67.46 |
| Shannon entropy | 0.64986 |
| G+C content | 0.36143 |
| Mean single sequence MFE | -22.26 |
| Consensus MFE | -8.80 |
| Energy contribution | -9.47 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15698495 110 + 24543557 AUUUUAAUUUCAUAUUAAUAU-UCCCUCGAUCAAUUUUAUUAUUUAUCCCCUGUGAUUUAUAGAUCGCUUACGCCGACAGCAACAAGUUGUCGCUGCUCGAGAUCUGUAAU---- .....................-...(((((.((...................((((((....))))))....((.((((((.....)))))))))).))))).........---- ( -21.60, z-score = -2.69, R) >droPer1.super_12 1651693 112 - 2414086 AUUUGCAUUUAAUAUACCCAGAUCGCCUGAUCGAUAUUA--AUU-AGCUGGUACGAUUUAUUGAUAGCUUAUGCUGACAGCAACAAGUUGUUCCCCCUCGAGAUCUGAUAUUAAU ........(((((((...((((((((.((((........--)))-))).((.(((((((.(((.((((....))))....))).))))))).)).......))))))))))))). ( -23.90, z-score = -1.99, R) >dp4.chrXR_group6 13228516 112 - 13314419 AUUUGCAUUUAAUAUACCCAGAUCGCCUGAUCGAUAUUA--AUU-AGCUGGUACGAUUUAUUGAUAGCUUAUGCUGACAGCAACAAGUUGUUCCCCCUCGAGAUCUGAUAUUAAU ........(((((((...((((((((.((((........--)))-))).((.(((((((.(((.((((....))))....))).))))))).)).......))))))))))))). ( -23.90, z-score = -1.99, R) >droAna3.scaffold_13337 11837382 98 - 23293914 ----------CGGAUAAUUUUUUCUUUAAAUUCCACGAUCUGUUGAUCUGAGGUGAUUUAUUGAUCGCUCUCAUUGGCAGGCAUAAUUUAU---CGAUCUAGUUGAGUAAU---- ----------....(((((...((..((((((....(.(((((..(..((((((((((....)))))).)))))..))))))..)))))).---.))...)))))......---- ( -21.30, z-score = -0.80, R) >droEre2.scaffold_4784 17955080 95 + 25762168 -------------AUUUUAAU---UUCUGAUUUACAUUGUUAUUUAUGCCCUGUGAUUUAUGGAUCGCUUGCGCCGACAGCAACAAGUGGUCGCUGCUCGGGAUAUGUAAU---- -------------........---.......((((((.(((......((...((((((....))))))..)).((((((((.((.....)).)))).))))))))))))).---- ( -23.50, z-score = -1.02, R) >droYak2.chr3L 18249055 110 + 24197627 AUUUUAAUUUCAGAUUAAUAU-UCCCCUGAUCAACUUUAUUAUUUAUCCGCUGUGACUUAUAGAUCGCUUAUGCCGACAGCAACAAGUUGUCGCUGCUCGAGAUCUGUAAU---- ............(((((....-.....))))).........................(((((((((((....))(((((((.((.....)).)))).))).))))))))).---- ( -22.30, z-score = -1.95, R) >droSec1.super_0 7809706 110 + 21120651 ACUUUAAUUUCAUAUUAAUAU-UCUCUAGAUCAACUCUAUUAUUUAUCCCCUGUGAUUUAUAGAUCGCUUACGCCGACAGCAACAAGUUGUCGCUGCUCGAAAUCUGUAAU---- .........(((((...(((.-....((((.....)))).....)))....))))).((((((((..(...((.(((((((.....))))))).))...)..)))))))).---- ( -19.40, z-score = -2.05, R) >droSim1.chr3L 15037628 109 + 22553184 AUUUUAAUUUCAUAUUAAUAU-UCCCUAGAUCAACUCUAUUAUU-UAUCCCCGUGAUUUAUAGAUCGCUUACGCCGACAGCAACAAGUUGUCGCUGCUCGAGAUCUGUAAU---- .........((((....(((.-....((((.....)))).....-)))....)))).(((((((((((....))(((((((.((.....)).)))).))).))))))))).---- ( -22.20, z-score = -2.86, R) >consensus AUUUUAAUUUCAUAUUAAUAU_UCCCCUGAUCAACUUUAUUAUUUAUCCCCUGUGAUUUAUAGAUCGCUUACGCCGACAGCAACAAGUUGUCGCUGCUCGAGAUCUGUAAU____ ............................((((....................((((((....)))))).......((((((.....)))))).........)))).......... ( -8.80 = -9.47 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:33 2011