| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,391,853 – 5,391,948 |
| Length | 95 |
| Max. P | 0.909561 |
| Location | 5,391,853 – 5,391,948 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 81.26 |
| Shannon entropy | 0.36893 |
| G+C content | 0.42187 |
| Mean single sequence MFE | -25.03 |
| Consensus MFE | -11.51 |
| Energy contribution | -12.65 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5391853 95 + 23011544 AAAACAAUAAAA-UACCCAACUAAUUAAGGCCGAGAUGAGGCCACAGCUG-CCAUGACAGCAGAGGAUCUGCUAUGCUC-UAUAGAUGGGUAUUCACA ..........((-((((((.(((.....((((.......))))...((((-......))))((((.((.....)).)))-).))).)))))))).... ( -29.00, z-score = -3.25, R) >droSim1.chr2L 5183457 95 + 22036055 AAAACAAUAAAA-UACCCAACUAAUUAAGGCCGAGAUGAGGCCACAGCUG-CCAUGACAACAGAGGAUCGGUUAUGCAC-UAUAGAUGGGUAUUCACA ..........((-((((((.(((.....((((.......))))..((.((-(.(((((....(.....).)))))))))-).))).)))))))).... ( -26.40, z-score = -3.35, R) >droSec1.super_5 3466983 95 + 5866729 AAAACAAUAAAA-UACCCAACUAAUUAAGGCCGAGAUGAGGCCACAGCUG-CCAUGACAGCAGAGGAUCGGCUAUGCAC-UAUAGAUGGGUAUUCGCA ..........((-((((((.(((.....((((.......))))..(((((-((.((....))..))..)))))......-..))).)))))))).... ( -26.60, z-score = -2.30, R) >droYak2.chr2L 8517340 96 - 22324452 AAAACAAUAAAA-UACCCAACUAAUUAAGGCCGAGAUGAGGCCACAGCUG-CCAUGACAGCAGAGGAUCCUACAUACAUAUAUAGAUGGGUAUUCACA ..........((-((((((.(((.....((((.......))))...((((-......)))).....................))).)))))))).... ( -25.80, z-score = -3.82, R) >droEre2.scaffold_4929 5473774 90 + 26641161 AAAACAAUAAAA-UACCCAACUAAUUAAGGCCGAGAUGAGGCCACAGCUG-CCAUGACAGGAGUGGAUC---UAUAUGGGUAC---UGGGUAUUCACA ..........((-((((((.((.....))(((.(....(((((((..(((-......)))..)))).))---)...).)))..---)))))))).... ( -23.00, z-score = -1.22, R) >droWil1.scaffold_180708 12042770 88 - 12563649 AAAACAAUAAAAAUGCCGGGCUAAUUAAGGCUGAGAUGAGACUACAGCUGGCUAUGAAUAUUGAC-AUC-GAUAUGGAUAUGGCUAUGGA-------- ...............(((..........(((((((......)).)))))(((((((.((((((..-..)-)))))...))))))).))).-------- ( -19.40, z-score = -2.27, R) >consensus AAAACAAUAAAA_UACCCAACUAAUUAAGGCCGAGAUGAGGCCACAGCUG_CCAUGACAGCAGAGGAUC_GAUAUGCAC_UAUAGAUGGGUAUUCACA .............((((((.........((((.......))))...((((.......)))).........................))))))...... (-11.51 = -12.65 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:49 2011