| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,681,330 – 15,681,421 |
| Length | 91 |
| Max. P | 0.831341 |
| Location | 15,681,330 – 15,681,421 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 77.03 |
| Shannon entropy | 0.41768 |
| G+C content | 0.36728 |
| Mean single sequence MFE | -22.35 |
| Consensus MFE | -10.50 |
| Energy contribution | -11.93 |
| Covariance contribution | 1.43 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.831341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15681330 91 + 24543557 UGUACGGGUUUCAUGUGAAACUGUCAAACCAAAAAUAAG-GUACCU-------GUGAGAGGUAAGCGAUAUUCUGCUUAUGUGGGAUAUUAAUGUCUCA ..((((((((((....)))))......(((........)-))..))-------))).(((..(...(((((((..(....)..)))))))..)..))). ( -23.20, z-score = -1.77, R) >droSim1.chr3L 15020493 91 + 22553184 UGUACGGGUUUCGUGUGAAACUGUCAAACCAAAAAUAUG-GUACCU-------GUGCGAGGUAAGCGAUAUUCUGCUUAUGUGGGAUAUUAAUGUCUCA .((((((((.((((((..................)))))-).))))-------))))(((..(...(((((((..(....)..)))))))..)..))). ( -29.07, z-score = -3.51, R) >droSec1.super_0 7792713 91 + 21120651 UGUACGGGUUCCAUGUGAAACUGUCAAACCAAAAAUAUG-GUACCU-------GUGCGAGGUAAGCGAUAUUCUGCUUAUGUGGGAUAUUAAUGUCUCA .((((((((.((((((..................)))))-).))))-------))))(((..(...(((((((..(....)..)))))))..)..))). ( -31.87, z-score = -4.28, R) >droYak2.chr3L 18231712 91 + 24197627 UGUACGGGUUUCAUGUGAAACUGUCAAACAAAAAAUAAG-GAACCU-------GCGAGAGGUAAGCGAUAUUCCGCUUAUGUGGGAUAUUAAUGUCUCA ....((((((((.(((.....((.....))....))).)-))))))-------).((((.((....((((((((((....)))))))))).)).)))). ( -27.30, z-score = -3.29, R) >droEre2.scaffold_4784 17938856 91 + 25762168 UGUACAGGUUUCAUGUGAAACUGUCAAACAAAAUAUAAG-GAACCU-------GUGGGAGGUAAGCGAUAUUCUGCUUAUGUGGCAUAUUAAUGUCUCA (.((((((((((.((((....((.....))...)))).)-))))))-------))).)..(((((((......)))))))(.(((((....))))).). ( -24.20, z-score = -2.15, R) >droVir3.scaffold_13049 2867062 84 - 25233164 ----------UCACGUGAAACUGUCAAAAAAAAAAGACAUAUAAAU----AUAAGUAAAGGUAAGCGAUAUU-UGUUCAAAUAGGGCAUUAAUGUCUCA ----------...........((((..........)))).......----..............(.((((((-(((((.....)))))..)))))).). ( -9.30, z-score = -0.29, R) >droGri2.scaffold_15110 21176020 88 + 24565398 ----------UCACGUGAAACUGUCAAAAAAAAGAGAAGAAAAGAUUAAAACAAGUAAAGGUAAACGAUAUU-UGUGCAUAUGGGGCAUUAAUGUCUCA ----------....(((...((.((........))..))...........(((((((..(.....)..))))-))).))).(((((((....))))))) ( -11.50, z-score = -0.25, R) >consensus UGUACGGGUUUCAUGUGAAACUGUCAAACAAAAAAUAAG_GUACCU_______GUGAGAGGUAAGCGAUAUUCUGCUUAUGUGGGAUAUUAAUGUCUCA ......((((((....))))))...................................(((..(...((((((((((....))))))))))..)..))). (-10.50 = -11.93 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:33 2011