| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,667,609 – 15,667,663 |
| Length | 54 |
| Max. P | 0.985716 |
| Location | 15,667,609 – 15,667,663 |
|---|---|
| Length | 54 |
| Sequences | 7 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 67.82 |
| Shannon entropy | 0.62435 |
| G+C content | 0.43895 |
| Mean single sequence MFE | -13.46 |
| Consensus MFE | -6.59 |
| Energy contribution | -8.04 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.985716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15667609 54 - 24543557 UCAAAGUGACUAGGAUGUGGACAACCGCGUUUUGGAAUU-GAAAAGUUAGACAGG--- .....((..(((((((((((....)))))))))))((((-....))))..))...--- ( -13.50, z-score = -2.28, R) >droEre2.scaffold_4784 17925394 54 - 25762168 UCAAAGUGACUAGGAUGUGGACAACCGCGUUUUGGAAUU-GAAAAGUUAGACAGG--- .....((..(((((((((((....)))))))))))((((-....))))..))...--- ( -13.50, z-score = -2.28, R) >droYak2.chr3L 18218177 54 - 24197627 UCAAAGUGACUAGGAUGUGGACAACCGCGUUUUGGAAUU-GAAAAGUUGGACAGG--- .....((..(((((((((((....)))))))))))((((-....))))..))...--- ( -13.50, z-score = -1.91, R) >droSec1.super_0 7778995 54 - 21120651 UCAAAGUGACUAGGAUGUGGACAACCGCGUUUUGGAAUU-GAAAAGUUAGACAGG--- .....((..(((((((((((....)))))))))))((((-....))))..))...--- ( -13.50, z-score = -2.28, R) >droSim1.chr3L 15006826 54 - 22553184 UCAAAGUGACUAGGAUGUGGACAACCGCGUUUUGGAAUU-GAAAAGUUAGACAGG--- .....((..(((((((((((....)))))))))))((((-....))))..))...--- ( -13.50, z-score = -2.28, R) >droWil1.scaffold_180727 1066292 53 + 2741493 ----UGUGUCUAGGAUGUGGUUUGCCCUUCCAAAAAAGG-GAUGAAACAUUCGAAUUG ----........((((((......(((((......))))-).....))))))...... ( -12.90, z-score = -1.54, R) >droVir3.scaffold_13049 2851387 53 + 25233164 --UGCCCAGCAGCAUUGAGGGCAAGUACCUCAUGAAAUGCGCAGCUUUAGUUAGG--- --.((...(((.(((.((((.......)))))))...)))...))..........--- ( -13.80, z-score = -0.25, R) >consensus UCAAAGUGACUAGGAUGUGGACAACCGCGUUUUGGAAUU_GAAAAGUUAGACAGG___ .........(((((((((((....)))))))))))....................... ( -6.59 = -8.04 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:31 2011