| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,662,805 – 15,662,910 |
| Length | 105 |
| Max. P | 0.760611 |
| Location | 15,662,805 – 15,662,910 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 78.57 |
| Shannon entropy | 0.40819 |
| G+C content | 0.42767 |
| Mean single sequence MFE | -29.12 |
| Consensus MFE | -13.97 |
| Energy contribution | -16.20 |
| Covariance contribution | 2.23 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.760611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15662805 105 - 24543557 -------AACCUGAUGC--CGAACCUGAACAUGAACCUCAAUGGAAAUUAUAGC-AAGUCUUGUCCAUUUAAGAGGAUUUAGGUUCGGUAGGUUCGCAUUUGUAUGCUAACAAGG -------..(((..(((--((((((((((......((((((((((....((...-..))....))))))...)))).))))))))))))).(((.((((....)))).))).))) ( -33.40, z-score = -3.47, R) >droSim1.chr3L 15002102 108 - 22553184 ----ACAAACCUGAUGC--CGAACCUGAACAUGAACCUCAAUGGAAAUUAUAGC-AAGUCUUGUCCAUUUAAGAGGAUUUAGGUUCGGUAGGUUCGCAUUUGUAUGCUAACAAGG ----.....(((..(((--((((((((((......((((((((((....((...-..))....))))))...)))).))))))))))))).(((.((((....)))).))).))) ( -33.40, z-score = -3.33, R) >droSec1.super_0 7774362 108 - 21120651 ----ACAAACCUGAUGC--CGAACCUGAACAUGAACCUCAAUGGAAAUUAUAGC-AAGUCUUGUCCAUUUAAGAGGAUUUAGGUUCGGUAGGUUCGCAUUUGUAUGCUAACAAGG ----.....(((..(((--((((((((((......((((((((((....((...-..))....))))))...)))).))))))))))))).(((.((((....)))).))).))) ( -33.40, z-score = -3.33, R) >droYak2.chr3L 18213339 112 - 24197627 CCUGAGAUGCCUGAUGC--CGAGCCUGAACAUGAACCUCAAUGGAAAUUAUAGC-AAGUCUUGUCCAUUUGAGGGGAUUUAGGUUCGGUAGGUUCGCAUUUGUAUGCUAACAAGG (((..((.((((...((--(((((((((((.....((((((((((....((...-..))....)))).)))))).).))))))))))))))))))((((....)))).....))) ( -37.90, z-score = -2.81, R) >droEre2.scaffold_4784 17920566 83 - 25762168 -------------------------------UGAGCCUCAAUGGAAAUUAUAGC-AAGUCUUGUCCGUUUAAGAGGAUUUAGGUUCGGUAGGUUCCCAUUUGUAUGCUAACAGGG -------------------------------..(((..(((.((((....((.(-.(..((.((((........))))..))..).).))..))))...)))...)))....... ( -15.60, z-score = 0.73, R) >droAna3.scaffold_13337 11798536 99 + 23293914 ----UCAGUCCUGAGCCUUCAGCCCUGAACCUGAACCCCGAUGGAAAUUAUAGCAAAGUGAUGUUCAUUUGAGACGCGUC------------UUCGCAUUUGUAUGCUAACAAGG ----((((..(((......)))..)))).(((.......(((....))).((((((((((.....))))).....(((..------------..))).......)))))...))) ( -21.00, z-score = -0.47, R) >consensus ____ACAAACCUGAUGC__CGAACCUGAACAUGAACCUCAAUGGAAAUUAUAGC_AAGUCUUGUCCAUUUAAGAGGAUUUAGGUUCGGUAGGUUCGCAUUUGUAUGCUAACAAGG ........................((((((.((((((((((((((....((......))....))))))...)))).)))).))))))...(((.((((....)))).))).... (-13.97 = -16.20 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:30 2011