| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,647,821 – 15,647,941 |
| Length | 120 |
| Max. P | 0.772270 |
| Location | 15,647,821 – 15,647,941 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.92 |
| Shannon entropy | 0.26481 |
| G+C content | 0.55167 |
| Mean single sequence MFE | -47.98 |
| Consensus MFE | -35.60 |
| Energy contribution | -35.08 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15647821 120 + 24543557 UGGAUCGAAUCCGCAUUCUGCAUUGUUGGGAAUGACAGGUCCUGGUCUGCAAGGUCCGGGAAAUGUGGGAGGCCAAGGACCGCCGGGAUUCCAACCUGGUGGAUUCCACGAGACACACCC ((..(((..(((((((((((((((......)))).))).((((((.((....)).)))))))))))))).......(((((((((((.......))))))))..))).)))..))..... ( -46.10, z-score = -0.80, R) >droSim1.chr3L 14987190 120 + 22553184 UGGAUCGAAUCCGCAUUCUGCAUUGUUGGGAAUAACAGGUCCUGGUCCGGAAGGUCCGGGAAAUGGGGGAAAACACGGACCGCCAGGAUUCCAACCUGGUGGAUUCCACGAGACACAGCC ((..(((..(((.((((((.((....)))))))..((..((((((.((....)).))))))..))).)))......(((((((((((.......))))))))..))).)))..))..... ( -49.70, z-score = -2.42, R) >droSec1.super_0 7760054 120 + 21120651 UGGAUCGAAUCCGCAUUCUGCAUUGUUGGGAAUGACAGGUCCUGGUCCGGAAGGUCCGGGAAAUGGGGAAAAACAAGGACCGCCAGGAUUCCAACCUGGUGGAUUCCACGAGACACAGCC ((..(((..(((.(((((((((((......)))).))).((((((.((....)).)))))))))).))).......(((((((((((.......))))))))..))).)))..))..... ( -51.10, z-score = -2.96, R) >droYak2.chr3L 18197444 120 + 24197627 UGGAUCAAAUCCGUUUUCUCCGUUGUUCGGAAUGAUAGGUCCGAGACCGAAAGGUCCGGGAUUUGUGGGUAUCCAAGGACCGUCGAGAUUCCAACCUGGUGGAUUCCACGAUGCACAUCC (((((...((((......((((.....))))...((((((((..((((....))))..))))))))))))))))).(((.(((((.((.((((......)))).))..)))))....))) ( -41.80, z-score = -0.75, R) >droEre2.scaffold_4784 17905884 120 + 25762168 UGGAUCAAAUCUGUUGUUUGGAUUGUUGGGAAUGACAGGUCCGGGGCCGAAAGGUCCGGGGUAUGUGGGUAUCCUAGGACCGUCAGGAUUCCAACCUGGUGGGUUCCACGCGGCACAUCC .((((......((((((.((((...((((((.((((.(((((.(((((....)))))(((((((....))))))).)))))))))...))))))((....))..)))).)))))).)))) ( -51.20, z-score = -2.25, R) >consensus UGGAUCGAAUCCGCAUUCUGCAUUGUUGGGAAUGACAGGUCCUGGUCCGAAAGGUCCGGGAAAUGUGGGAAACCAAGGACCGCCAGGAUUCCAACCUGGUGGAUUCCACGAGACACAGCC .((((...))))...........((((.(((((..((..((((((.((....)).))))))..))..............((((((((.......)))))))))))))....))))..... (-35.60 = -35.08 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:27 2011