| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,638,874 – 15,638,975 |
| Length | 101 |
| Max. P | 0.532787 |
| Location | 15,638,874 – 15,638,975 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 83.89 |
| Shannon entropy | 0.29305 |
| G+C content | 0.39198 |
| Mean single sequence MFE | -21.82 |
| Consensus MFE | -14.94 |
| Energy contribution | -15.38 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.532787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15638874 101 + 24543557 UAUCAAAAAACAAGGCAA---------CAAAAGUCAUCGGUUUUAGUUAAACACAAUUUUGCACACUCAAAUGGGCGUAACAUAGCCCUAUUUAUGUGCACUUUGAACCU ..(((((((((..(((..---------.....)))....)))))...............((((((...((((((((........)))).)))).))))))..)))).... ( -20.80, z-score = -1.95, R) >droEre2.scaffold_4784 17896675 109 + 25762168 UCCCAAAAAACAGUGCAAAUAUUCCUGCAGACGUCUUCG-CCUUAGUUAAACACAAUUUUGCCCAGCCAAAUGGGCGUAACACAGCCCUAUUUAUGUGCACUUUGAACCU ...........((((((.(((.....((((.((....))-.))..((((..........((((((......))))))))))...))......))).))))))........ ( -19.60, z-score = -0.42, R) >droYak2.chr3L 18187781 105 + 24197627 UACCGAAAAACCAUGCAAAAAUUCUUGUU----UCAUCG-CUUUAGUUAAACACAAUUUUGCACACCCAAAUGGGCGUAACAGAGUCCUAUUUAUGUGCACUCCGAACCU ...((........(((((((.....((((----(...(.-.....)..)))))...)))))))(((..((((((((........).)))))))..))).....))..... ( -15.70, z-score = -0.22, R) >droSec1.super_0 7751299 110 + 21120651 UAUCAAAAAACGAGGCAAAUACUCCGGCAAAAGUCAUCGAUUUUCGUUAAACACAAUUUUGCACACUCAAAUGGGCGUAACAUAGCCCUAUUUAUGUGCACUUUGAACCU ..(((((.(((((((........))(((....)))........)))))...........((((((...((((((((........)))).)))).)))))).))))).... ( -24.80, z-score = -2.65, R) >droSim1.chr3L 14978093 110 + 22553184 UAUCAAAGAACGAGGCAAAUACUCCGGCAAAAGUCAUCGGUUUUCGUUAAACACAAUUUUGCACACUCAAAUGGGCGUAACAUAGCCCUAUUUAUGUGCACUUUGAACCU ..(((((((((((((........))(((....)))........)))))...........((((((...((((((((........)))).)))).)))))))))))).... ( -28.20, z-score = -2.94, R) >consensus UAUCAAAAAACAAGGCAAAUACUCCGGCAAAAGUCAUCG_UUUUAGUUAAACACAAUUUUGCACACUCAAAUGGGCGUAACAUAGCCCUAUUUAUGUGCACUUUGAACCU .....................................................(((...((((((...((((((((........)))).)))).))))))..)))..... (-14.94 = -15.38 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:24 2011