| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,631,497 – 15,631,622 |
| Length | 125 |
| Max. P | 0.881873 |
| Location | 15,631,497 – 15,631,622 |
|---|---|
| Length | 125 |
| Sequences | 4 |
| Columns | 133 |
| Reading direction | reverse |
| Mean pairwise identity | 74.55 |
| Shannon entropy | 0.36770 |
| G+C content | 0.56516 |
| Mean single sequence MFE | -37.12 |
| Consensus MFE | -24.28 |
| Energy contribution | -23.91 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15631497 125 - 24543557 --------AGAACCGGAGAACCGGGGAAACUGGGUAGCCGGGGGCAAAACGGGGAAUCGGGAACCGAGAACAUCGGGAGAUAGGGAGAUAUCUCACAAAGAGGAGUGUUCGAACAACUGACGGCAUUUGUUCG --------....((((...(((.((....)).)))..))))(((((...(.............((((.....))))((((((......)))))).......)...)))))((((((.((....)).)))))). ( -41.10, z-score = -2.76, R) >droYak2.chr3L 18180121 122 - 24197627 GGAACCGGAGAACCGGGGAAACUGGGAAACUGGGUAGCCGGG---AUAUCGGGGGAUCGGGGGCCGGGAACAUG--------GGGAGAUAUCUCACAAAGAGGAGUGUUCGAACAACUGACGGCAUUUGUUCG ....((((....((.((....)).))...((.(((..((((.---...))))...))).))..))))((((((.--------((((....))))..........))))))((((((.((....)).)))))). ( -38.40, z-score = -1.24, R) >droSec1.super_0 7743965 98 - 21120651 -------------------------GGAACCGGAGAACCGGGG--AAACUGGGGAAUCGGGGACCGGGAACAUC--------GGGAGAUAUCCCACAAAGAGGAGUGUUCGAACAACUGACGGCAUUUGUUCG -------------------------((..((.((...((.((.--...)).))...)).))..))..(((((((--------((((....)))).(.....))).)))))((((((.((....)).)))))). ( -35.20, z-score = -2.13, R) >droSim1.chr3L 14970661 98 - 22553184 -------------------------GGAACCGGAGAACCGGGG--AAACUGGGGAAUCGGGGACCGGGAACAUC--------GGGAGAUAUCCCACAAGGAGGAGUGUUCGAACAACUGACGGCAUUUGGUCG -------------------------....((.((...((.((.--...)).))...)).))((((((((..(((--------....))).))))........(((((((((......)))..)))))))))). ( -33.80, z-score = -1.44, R) >consensus _________________________GAAACCGGAGAACCGGGG__AAACCGGGGAAUCGGGGACCGGGAACAUC________GGGAGAUAUCCCACAAAGAGGAGUGUUCGAACAACUGACGGCAUUUGUUCG .............................((((....)))).......((((...........))))((((((.........((((....))))..........))))))((((((.((....)).)))))). (-24.28 = -23.91 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:23 2011