| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,378,140 – 5,378,230 |
| Length | 90 |
| Max. P | 0.974086 |
| Location | 5,378,140 – 5,378,230 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 67.89 |
| Shannon entropy | 0.53682 |
| G+C content | 0.60216 |
| Mean single sequence MFE | -35.42 |
| Consensus MFE | -21.31 |
| Energy contribution | -21.87 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.974086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5378140 90 + 23011544 ACCGUACAGUAGUCACUAAUGGGUGGCUGCUGAUGGUUU-UGGAGGUGGUUGUGGUCGUGGUGGGGCAGCUCCAAUGGC-GCCAGGCGGAGC-------- .((((.(((((((((((....))))))))))).((((.(-(((((.((.((............)).)).))))))....-)))).))))...-------- ( -36.10, z-score = -1.86, R) >droSim1.chr2L 5169904 87 + 22036055 ACCGUACAGUAGUCACUAAUGGGUGGCUGCUGAUGGUUU-UGGAGGUGGU---GGUCGUGGUGGGGCAGCUCCAAUGGC-GCCAGGCGGAGC-------- .((((.(((((((((((....))))))))))).((((.(-(((((.((.(---...........).)).))))))....-)))).))))...-------- ( -35.70, z-score = -1.93, R) >droSec1.super_5 3453551 87 + 5866729 ACCGUACAGUAGUCACUAAUGGGUGGCUGCUGAUGGUUU-UGGAGGUGGU---GGUCGUGGUGGGGCAGCUCCAAUGGC-GCCAGGCGGAGC-------- .((((.(((((((((((....))))))))))).((((.(-(((((.((.(---...........).)).))))))....-)))).))))...-------- ( -35.70, z-score = -1.93, R) >droEre2.scaffold_4929 5460363 74 + 26641161 ACCGUACAGUAGUCACUAAUGGGUGGCUGCUGAUGGUUUCUGGAGGUGGU---GG--------------CUCCAAUGGC-GCCAGGCGGAGC-------- .((((.(((((((((((....))))))))))).((((.(((((((.....---..--------------)))))..)).-)))).))))...-------- ( -33.00, z-score = -2.71, R) >dp4.chr4_group1 4673460 90 + 5278887 GUUGCACAGUAGUCG---AUGGGUGGCU--UGGCGGCUCCUGAUGCUGAUGCUGCC-----UGAUGAUACUGAUGUGGCCACCAGCUGGCGCCACAGCCU ...((.(((((.(((---.((((..(((--..(((........)))..).))..))-----)).)))))))).((((((..((....)).)))))))).. ( -36.00, z-score = -0.75, R) >droPer1.super_5 6269513 90 - 6813705 GUUGCACAGUAGUCG---AUGGGUGGCU--UGGCGGCUCCUGAUGCUGAUGCUGCC-----UGAUGAUACUGAUGUGGCCACCAGCUGGCGCCACAGCCU ...((.(((((.(((---.((((..(((--..(((........)))..).))..))-----)).)))))))).((((((..((....)).)))))))).. ( -36.00, z-score = -0.75, R) >consensus ACCGUACAGUAGUCACUAAUGGGUGGCUGCUGAUGGUUU_UGGAGGUGGU___GGU_____UGGGGCAGCUCCAAUGGC_GCCAGGCGGAGC________ (((((.(((((((((((....))))))))))))))))................................((((..(((...)))...))))......... (-21.31 = -21.87 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:48 2011