| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,617,891 – 15,617,963 |
| Length | 72 |
| Max. P | 0.877117 |
| Location | 15,617,891 – 15,617,963 |
|---|---|
| Length | 72 |
| Sequences | 7 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 74.89 |
| Shannon entropy | 0.41917 |
| G+C content | 0.36929 |
| Mean single sequence MFE | -11.84 |
| Consensus MFE | -10.90 |
| Energy contribution | -10.51 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877117 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15617891 72 - 24543557 AAAUUGGCUUUUGUUUAGACCGGAAUGCCGGUCGAAAUGAAAACGUCACUCACAAAAGAAGUGCAGAAGCUU .....(((((((((...((((((....))))))((..(....)..))...............))))))))). ( -21.60, z-score = -2.79, R) >droSim1.chr3L 14957235 60 - 22553184 AAAUUGGCUUUUGUUUAGACCGGAAUGCCGCUCGAAAUGAAAAUGUCACUCACCAAAGAA------------ ....(((((((..(((.((.(((....))).)).)))..)))..))))............------------ ( -10.70, z-score = -0.51, R) >droSec1.super_0 7730493 60 - 21120651 AAAUUGGCUUUUGUUUAGACCGGAAUGCCGCUCGAAAUGAAAAUGUCACUCCCCAAAGAA------------ ....(((((((..(((.((.(((....))).)).)))..)))..))))............------------ ( -10.70, z-score = -0.62, R) >droYak2.chr3L 18165931 60 - 24197627 AAAUUGGCUUUUGUUUAGUCCGGAAUGUCGGGCGAAAUGAAAAUGUCACUCACCAAAGAA------------ ....(((((((..(((.((((((....)))))).)))..)))..))))............------------ ( -13.90, z-score = -1.11, R) >droEre2.scaffold_4784 17875770 60 - 25762168 AAAUUGGCUUUUGUUUAGACCGGAAUGCCGGGCGAAAUGAAAAUGUCACUCACAAAAGAA------------ .......(((((((..((.((((....))))..((.((....)).)).)).)))))))..------------ ( -13.40, z-score = -1.14, R) >dp4.chrXR_group6 13168976 58 + 13314419 AAAUUGGUUUUU--UCAGCUUCAAAUUCCAAGUAGAAUGAAAAUGUCAACGAUACAAAAA------------ ...((((..(((--(((((((........))))....))))))..))))...........------------ ( -6.30, z-score = -0.09, R) >droPer1.super_12 1584153 58 + 2414086 AAAUUGGUUUUU--UCAGCUUCAAAUUCCAAGUAGAAUGAAAAUGUCAACGAUACAAAAA------------ ...((((..(((--(((((((........))))....))))))..))))...........------------ ( -6.30, z-score = -0.09, R) >consensus AAAUUGGCUUUUGUUUAGACCGGAAUGCCGGGCGAAAUGAAAAUGUCACUCACAAAAGAA____________ ....((((((((((((.((((((....)))))).))))))))..))))........................ (-10.90 = -10.51 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:20 2011