| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,594,157 – 15,594,247 |
| Length | 90 |
| Max. P | 0.602117 |
| Location | 15,594,157 – 15,594,247 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 69.31 |
| Shannon entropy | 0.58051 |
| G+C content | 0.30236 |
| Mean single sequence MFE | -16.38 |
| Consensus MFE | -7.41 |
| Energy contribution | -8.17 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602117 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15594157 90 + 24543557 GAUAGAUAACUUAAC-AAACUAAUUU-GUCGAUGAAUUAUUAAGAUGUUAAUA------AUUAAGCGCGUCCUUAAUCGAUUUAUUGAUUGGUUAAAU ...............-....((((..-(((((((((((((((((((((.....------.......)))).)))))).)))))))))))..))))... ( -17.10, z-score = -1.99, R) >droSim1.chr3L 14933827 92 + 22553184 -----AUAACUUAAC-AAACUAAUUUUGUCGAUGAAAUAUUAAGAUGUUUACGCAUGCCAUUAAGCGCGUCCUUAAUCGAUUUAUUGAUUGGUUAAAU -----..........-.((((((((..((((((.((((((....))))))((((..((......)))))).....)))))).....)))))))).... ( -16.70, z-score = -1.18, R) >droSec1.super_0 7707011 92 + 21120651 -----AUAACUUAAC-AAACUUAUUUUGUCGAUGAAUUAUUAAGAUGUUUACGCAUGCCAUUAAGCGCGUCCUUAAUCGAUUUAUUGAUUGGUUAAAU -----.(((((....-...........(((((((((((((((((......((((..((......)))))).)))))).))))))))))).)))))... ( -16.59, z-score = -1.12, R) >droYak2.chr3L 18141902 94 + 24197627 --GAUAUUACUUAAC-UAACUAAUUU-GUCGCUGAAUUAUUAAGAUGUUGACUCAUUCCAUUGAGCGCGUCCCUAAUCGAUUUAUUGAUUGGCUAAAU --........(((.(-(((.((((..-((((.......((((.(((((.(.((((......))))))))))..))))))))..)))).)))).))).. ( -14.81, z-score = -0.82, R) >droEre2.scaffold_4784 17852441 94 + 25762168 --GGUAUUGCUUAAC-AAACUAAUUU-GUCGAUGAAUUAUUUAGAAGCUGACUCAUUCCAUUGAGAGUGUCCUUAAUCGAUUUAUUGAUUGGUUAAAU --.............-....((((..-(((((((((((..((((..((...((((......))))...))..))))..)))))))))))..))))... ( -18.70, z-score = -1.28, R) >triCas2.ChLG4 10381008 87 - 13894384 -----AUAAUUUUACGAAAAUCUCUUUACCACCUUAAGGGAUAAAAAUUCAUUC-CCUUAUUUAAGAAGGCACGAGCCCUUUGGCCUAUUAAU----- -----.................((((........(((((((...........))-)))))...))))((((.((((...))))))))......----- ( -14.40, z-score = -0.89, R) >consensus _____AUAACUUAAC_AAACUAAUUU_GUCGAUGAAUUAUUAAGAUGUUGACUCAUGCCAUUAAGCGCGUCCUUAAUCGAUUUAUUGAUUGGUUAAAU ...........................(((((((((((((((((((((..................)))).)))))).)))))))))))......... ( -7.41 = -8.17 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:18 2011