| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,592,120 – 15,592,222 |
| Length | 102 |
| Max. P | 0.935872 |
| Location | 15,592,120 – 15,592,222 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 65.05 |
| Shannon entropy | 0.61616 |
| G+C content | 0.42768 |
| Mean single sequence MFE | -24.67 |
| Consensus MFE | -10.55 |
| Energy contribution | -11.72 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.935872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15592120 102 - 24543557 GAAAUUAGCCAAGACAACC-------------AACCAGCAUGAACUGUCGUCACAAGUGGAGAAAUCCAUCCAAAGUGGCAAAGUGAGAGGUGGGUACCUCAAAUGCUGUAAAUU ...................-------------...((((((..(((...(((((..(((((....))))).....)))))..)))..(((((....)))))..))))))...... ( -27.60, z-score = -2.03, R) >droEre2.scaffold_4784 17850372 108 - 25762168 GAAAUUAGCCAAGACGACUUCUACGACGAUGGAGCCCGCAUGAACU---GUCACAAAUGGAGAA----AUCCUAAGUGGCAAACUGAGAGGUGGGCACCUUAAAUGCUGUAAAUU .....((((..(((.....)))........((.((((........(---(((((....(((...----.)))...)))))).(((....))))))).))......))))...... ( -28.30, z-score = -1.93, R) >droYak2.chr3L 18139819 108 - 24197627 GAAAUUAGCCAACACAACUUCUACGACGAUGGAACCCGCAUGAACU---GUCACAACUGGAGAA----AUCCAAAGUGGCGAAGUGAGAGGUUGGUACCUCAAAUGCUGUAAAUU .....((((.......(((((...(.((........))).......---(((((...((((...----.))))..))))))))))..(((((....)))))....))))...... ( -27.30, z-score = -1.62, R) >droSec1.super_0 7705104 87 - 21120651 GAAAUUAGCCAAGACAAGC-------------AACCCGCAUGAACUGUCGUCACAAGUGGAGAA----AUCCAAAGUGGCAAACUGAGAGGUGGGUACCACAAA----------- .......((........))-------------.((((((..((....))(((((...((((...----.))))..)))))..........))))))........----------- ( -23.50, z-score = -1.81, R) >droSim1.chr3L 14931925 87 - 22553184 GAAAUUAGCCAAGACAACC-------------AGCCCGCAUGAACUGUCGUCACAAGUGGAGAA----AUCCAAAGUGGCAAACUGAGAGGUGGGUACCUCAAA----------- ....((((....((((..(-------------(.......))...))))(((((...((((...----.))))..)))))...))))(((((....)))))...----------- ( -24.40, z-score = -1.74, R) >droMoj3.scaffold_6680 7698491 99 + 24764193 AAAAAAAGUAAAUAAAUGA-----------GACUUUUGUAUAAAAAGAAAUUAUGACUUGGCAAA-AGGUCCUCAGU----AAACGAGAAGUUCAUCCGAUUAUUUAUUUGGAUU .....((((((((((.(((-----------(.(((((.....))))).......(((((......-)))))))))..----...((.((......)))).))))))))))..... ( -16.90, z-score = -1.27, R) >consensus GAAAUUAGCCAAGACAACC_____________AACCCGCAUGAACUGUCGUCACAAGUGGAGAA____AUCCAAAGUGGCAAACUGAGAGGUGGGUACCUCAAAUGCUGUAAAUU .................................................(((((...((((........))))..))))).......(((((....))))).............. (-10.55 = -11.72 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:17 2011