| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,590,356 – 15,590,463 |
| Length | 107 |
| Max. P | 0.812141 |
| Location | 15,590,356 – 15,590,463 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 88.61 |
| Shannon entropy | 0.17052 |
| G+C content | 0.52127 |
| Mean single sequence MFE | -34.27 |
| Consensus MFE | -25.92 |
| Energy contribution | -28.30 |
| Covariance contribution | 2.38 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15590356 107 - 24543557 GGAGAUCUUGAAUCCCCAUCUCGGUGGCAGUCGCGGUUUCAGUCGCUCCCAGUGAGUAAGUCAAGUGAGUGAGUGAAUUGUGCCGAUUGUCGAGGUCUGCGUAUGUG (.(((((((((....((((....))))((((((((..((((.((((((....(((.....)))...)))))).))))...)).))))))))))))))).)....... ( -37.90, z-score = -2.94, R) >droSec1.super_0 7703416 107 - 21120651 GGAGAUCUCGAAUCCGCAUCUCGGUGGCAGUCGCGGUUUCAGUUGCUCCCAGUGAGUAAGUCAAGUGAGUGAGUGAAUUGUGCCGACUGUCGAGGUCUGCGUAUGUG (.(((((((((..((((......))))((((((((..((((.(..(((....(((.....)))...)))..).))))...)).))))))))))))))).)....... ( -40.00, z-score = -2.72, R) >droYak2.chr3L 18138109 97 - 24197627 GGAGAUCUCCAAUCUCCAUCUCG------GUCGCGGUUUCAGUUGCUCCGAGUGAGUAAGUCA----AGUGAGUGAAUUAUGCCGACUGUCGAGGUCUGUGUAUGUG ((((((.....))))))((((((------(..(((((.....(..((((...(((.....)))----.).)))..).....)))).)..)))))))........... ( -29.60, z-score = -1.59, R) >droEre2.scaffold_4784 17848705 97 - 25762168 GGAGAUCUCCAAUCUCCAUCUCG------GUCGCGGUUUCAGUUGCUCCGAGUGAGUAAGUCA----AGUGAGUGAAUUAUGCCGACUGUCGAGGUCUGUGUAUGUG ((((((.....))))))((((((------(..(((((.....(..((((...(((.....)))----.).)))..).....)))).)..)))))))........... ( -29.60, z-score = -1.59, R) >consensus GGAGAUCUCCAAUCCCCAUCUCG______GUCGCGGUUUCAGUUGCUCCCAGUGAGUAAGUCA____AGUGAGUGAAUUAUGCCGACUGUCGAGGUCUGCGUAUGUG ((((((.....))))))((((((...(((((((((..((((.((((((....(((.....)))...)))))).))))...)).)))))))))))))........... (-25.92 = -28.30 + 2.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:16 2011