| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,589,227 – 15,589,332 |
| Length | 105 |
| Max. P | 0.752496 |
| Location | 15,589,227 – 15,589,332 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 123 |
| Reading direction | reverse |
| Mean pairwise identity | 78.66 |
| Shannon entropy | 0.34660 |
| G+C content | 0.30470 |
| Mean single sequence MFE | -18.45 |
| Consensus MFE | -12.33 |
| Energy contribution | -12.57 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.752496 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15589227 105 - 24543557 ACUGAGAUCUUAACUGAUCAUUAAUAUAAUUUA---------UCAGUUAACAGCGUGUCAUGUUUA------GCAUUUGCAUUUGGAAGUAUGACUUCCCCUAUUCUAAAAUGUCUUCUC--- ...((((..(((((((((.((((...))))..)---------))))))))..((((..........------((....))....(((((.....)))))...........))))..))))--- ( -17.50, z-score = -0.59, R) >droSim1.chr3L 14929176 108 - 22553184 ACUUAGAUCUUAACUGAUCAUUAAUAUAAUUUA---------UCAGUUGACAUCGUGUCAUGUUUA------GCAUUUGCAUUUGCAAGUAUGACUUCCCCUAUUCUAAAAUGUCUUCUUCUC .....(((.(((((((((.((((...))))..)---------)))))))).)))..(((((((((.------(((........))))))))))))............................ ( -19.70, z-score = -2.36, R) >droSec1.super_0 7702344 111 - 21120651 ACUUAGAUCUUAACUGAUCAUUAAUAUAAUUUA---------UCAGUUAACAUCGUGUCAUGUUUAGCAUUUGCAUUUGCAUUUGCAAGUAUGACUUCCCCUAUUCUAAAAUGUUUUCUC--- .....(((.(((((((((.((((...))))..)---------)))))))).)))..(((((((((.(((..(((....)))..)))))))))))).........................--- ( -25.20, z-score = -4.37, R) >droYak2.chr3L 18136993 99 - 24197627 --AAUGAUCUUAACUGACCGUUAAUAUAAUUUA---------UCAGUUAAUAUCGCGUCAUGUUAA------GCAUUUUCAUUUGGAUAUAUGACUUCCCAUAUUUUCAUCUGUUC------- --(((((.((((((((((((......((((...---------...))))....)).)))).)))))------).....)))))((((.(((((......))))).)))).......------- ( -17.10, z-score = -1.86, R) >droEre2.scaffold_4784 17847617 112 - 25762168 --ACUGAUCUUAACUGAACACUAAUACAAUUUAUACAAUAUGUCAGUAAAUAUCGUGUCAUGUUAG------GCAUUUCCAUUUGGAUAUAUGACUUCCCCUAAUUUAAAAUGUCUUUUC--- --...(((.((.(((((.((....................))))))).)).)))..(((((((...------.....(((....))).))))))).........................--- ( -12.75, z-score = 0.79, R) >consensus ACUUAGAUCUUAACUGAUCAUUAAUAUAAUUUA_________UCAGUUAACAUCGUGUCAUGUUUA______GCAUUUGCAUUUGGAAGUAUGACUUCCCCUAUUCUAAAAUGUCUUCUC___ .....(((.((((((((.........................)))))))).)))..(((((((.........))((((((....)))))))))))............................ (-12.33 = -12.57 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:16 2011