| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,587,569 – 15,587,635 |
| Length | 66 |
| Max. P | 0.962564 |
| Location | 15,587,569 – 15,587,635 |
|---|---|
| Length | 66 |
| Sequences | 9 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 61.49 |
| Shannon entropy | 0.78302 |
| G+C content | 0.58184 |
| Mean single sequence MFE | -15.50 |
| Consensus MFE | -5.28 |
| Energy contribution | -5.90 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.962564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15587569 66 + 24543557 --UCGAUAAGCCGUCAUCGUCAUCCGACGUCUGGAAGGGCCCCUCCCCUUCCAC--UCCUCCCUUCCAUC --..(((.....)))..((((....))))..((((((((......)))))))).--.............. ( -16.90, z-score = -2.58, R) >droSim1.chr3L 14927532 66 + 22553184 --UCGAUAAGCCGUCAUCGUCAUCCGACGUCUGGAAGGGCCCCGCCCCUUCCAC--UCCUCCCUUCCAUC --..(((.....)))..((((....))))..((((((((......)))))))).--.............. ( -16.90, z-score = -2.11, R) >droSec1.super_0 7700726 66 + 21120651 --UCGAUAAGCCGUCAUCGUCAUCCGACGUCUGGAAGGGCCCCUCCCCUUCCAC--UCCUCCCUUCCAUC --..(((.....)))..((((....))))..((((((((......)))))))).--.............. ( -16.90, z-score = -2.58, R) >droYak2.chr3L 18135229 66 + 24197627 --UCGAUAAGCCGUCGUCGUCAUCCGACGUCUGGAAGGGCCCCUCCCCUUCCUC--UCUUCCCUUCCAUC --..((..((..(.(((((.....))))).).(((((((......))))))).)--)..))......... ( -19.10, z-score = -3.10, R) >droEre2.scaffold_4784 17845971 66 + 25762168 --UCGAUAAGCCGUCGUCGUCAUCCGACGUCUGGAAGGGCCCCUCCCUUUCCAC--UCUUCCCUUCCAUC --..........(.(((((.....))))).)((((((((...............--....)))))))).. ( -17.91, z-score = -2.51, R) >dp4.chrXR_group6 13142370 52 - 13314419 ----------------UCAUCAUCCGAAGUCUGAAAGGGCCUCACGCCGCCCUC--CUCCUUCUCCCGCC ----------------.........((((...((.(((((........))))).--.))))))....... ( -10.30, z-score = -1.02, R) >droPer1.super_12 1557436 52 - 2414086 ----------------UCAUCAUCCGAAGUCUGAAAGGGCCUCACGCCGCCCUC--CUCCUUCUCCCGCC ----------------.........((((...((.(((((........))))).--.))))))....... ( -10.30, z-score = -1.02, R) >droWil1.scaffold_181089 7232574 67 + 12369635 --CAGACCGGUCCACAUGAACA-CUGAUUCUUCGGAGGUCUGAAUGUUGCGCACAGUUUUCCAUUCCAAC --.(((((.((.(....).)).-((((....)))).)))))(((((..((.....))....))))).... ( -13.20, z-score = 0.42, R) >droGri2.scaffold_15110 21072600 63 + 24565398 UUAACAAGAGACGACAUCGACAUC-GACGUCUUGGAUGGCUGUCUGUAUGUCUG--UCUUUCUGUU---- ..(((((((((((((((..(((..-((((((......))).))))))))))).)--))))).))))---- ( -18.00, z-score = -1.41, R) >consensus __UCGAUAAGCCGUCAUCGUCAUCCGACGUCUGGAAGGGCCCCUCCCCUUCCAC__UCCUCCCUUCCAUC .................((((....))))..((((((((.....................)))))))).. ( -5.28 = -5.90 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:13 2011