| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,586,690 – 15,586,780 |
| Length | 90 |
| Max. P | 0.593736 |
| Location | 15,586,690 – 15,586,780 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 78.21 |
| Shannon entropy | 0.39759 |
| G+C content | 0.41058 |
| Mean single sequence MFE | -23.46 |
| Consensus MFE | -8.27 |
| Energy contribution | -9.27 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593736 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15586690 90 - 24543557 AUAGAAGUUAAACGAAAGAGCAACAGGCGUUGGAAAAAGCUCGCGAAAGC-UCUUUUUCAGCCAGGCAACAAGUUGCGAAUAACAGGACUA ......((((..(....).(((((.(((....(((((((...((....))-.))))))).))).(....)..)))))...))))....... ( -28.40, z-score = -3.40, R) >droSim1.chr3L 14926685 90 - 22553184 AUAGAAGUUAAACGAAAGAGCAACAGGCGUUGGAAAAAGCUCGCGAAAGC-UCUUUUUCAGUCAGGCAACAAGUUGCGAAUAACAGGACUA ......((((..(....).(((((.(((....(((((((...((....))-.))))))).))).(....)..)))))...))))....... ( -25.70, z-score = -2.67, R) >droSec1.super_0 7699870 90 - 21120651 AUAGAAGUUAAACGAAAGAGCAACAGGCGUUGGAAAAAGCUCGCGAAAGC-UCUUUUUCAGUCAGGCAACAAGUUGCGAAUAACAGGACUA ......((((..(....).(((((.(((....(((((((...((....))-.))))))).))).(....)..)))))...))))....... ( -25.70, z-score = -2.67, R) >droYak2.chr3L 18134231 90 - 24197627 AUAGAAGUUAAACGGAAGAGCAACAGGCGUUGG-AAAAGCUUGCGAAAGCUUUUUUUUCAGCCAGGCAACAAGUUGCGAAUAACAGGACUC ......((((..(....).(((((.(((...((-((((((((....))))))))))....))).(....)..)))))...))))....... ( -28.30, z-score = -3.28, R) >droEre2.scaffold_4784 17844982 90 - 25762168 AUAUAAGUCAAACGGAAGAGCAACAGGCGUUGGAAAAAGCUUGCGAAAGC-UCUUUUUCAGCAAGGCAACAAGUUGCGAAUAACAGGACUC .....((((...(....).(((((....((((((((((((((....))))-).)))))))))..(....)..))))).........)))). ( -28.00, z-score = -3.57, R) >dp4.chrXR_group6 13141789 80 + 13314419 ----------AACAACAAUCAAAGAGACUCCUUAAAAAGCUUGAAAAAAG-CUUUUUCCAGUUAGUCAACAAGUUGCGAACACCAGGACUA ----------..................((((.(((((((((.....)))-))))))...(((.(.(((....)))).)))...))))... ( -13.30, z-score = -0.93, R) >droPer1.super_12 1556865 79 + 2414086 ----------AACAACAAUCAAAGAGACUCCUUAAAAAGCUUG-AAAAAG-CUUUUUCCAGUUAGUCAACAAGUUGCGAACACCAGGACUA ----------..................((((.(((((((((.-...)))-))))))...(((.(.(((....)))).)))...))))... ( -14.80, z-score = -1.51, R) >consensus AUAGAAGUUAAACGAAAGAGCAACAGGCGUUGGAAAAAGCUUGCGAAAGC_UCUUUUUCAGUCAGGCAACAAGUUGCGAAUAACAGGACUA ...................(((((.(((....(.(((((...((....))..))))).).))).(....)..))))).............. ( -8.27 = -9.27 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:12 2011