| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,541,510 – 15,541,607 |
| Length | 97 |
| Max. P | 0.719494 |
| Location | 15,541,510 – 15,541,607 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 79.78 |
| Shannon entropy | 0.30388 |
| G+C content | 0.44631 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -17.83 |
| Energy contribution | -18.32 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15541510 97 + 24543557 UCAAGGUGGACCUAUGCAAUUUGAACGAUUGCUGUUCGAAACAGAGCGAUCACCGAUAACACGCCCAAUUGCAUUUAGACGCAGACCGAACAAUUUU---------------- .....(((.....((((((((.(...(((((((.(.......).)))))))..((......)).).)))))))).....)))...............---------------- ( -18.60, z-score = -0.64, R) >droEre2.scaffold_4784 17799302 97 + 25762168 UCAAGGUGCACCUAUGCAAUUGGAACGAUUGCUGAUUGAA-UAGAGCGAUCACCGAUAACUCGGCCCAUUACAUCUAGACGCAGAGCCACCAACUCUG--------------- ....((((...((.(((..(((((..(((((((.......-...))))))).((((....)))).........)))))..))).)).)))).......--------------- ( -24.00, z-score = -1.76, R) >droYak2.chr3L 18057621 98 + 24197627 UCAAGGUGAAACUAUGCAACUCGAACGAUUGCUUAUUGAAAUAGAGCGAUCACCGAUAACUCGGGCAAUUGCAUCUAGGCGCAGACCCACUAACUCUG--------------- ....((((......(((..((.((..((((((((.........)))))))).((((....))))((....)).)).))..)))....)))).......--------------- ( -23.20, z-score = -1.55, R) >droSim1.chr3L 14882882 113 + 22553184 UCAAGGUGGACCUAUGCAAUUUGAACGAUUGCUGAUUGAAACAGAGCGAUCACCGAUAACACGGCCAAUUGCAUUUAGACGCACACCGAACAAUUUUGUUUUUUUUUUCUCUU ....(((((..((((((((((.(...(((((((...........))))))).(((......)))).)))))))..)))...).))))(((((....)))))............ ( -24.70, z-score = -1.66, R) >consensus UCAAGGUGGACCUAUGCAAUUUGAACGAUUGCUGAUUGAAACAGAGCGAUCACCGAUAACACGGCCAAUUGCAUCUAGACGCAGACCCAACAACUCUG_______________ .....(((.....((((((.(((...(((((((...........))))))).(((......))).))))))))).....)))............................... (-17.83 = -18.32 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:12 2011