| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,537,177 – 15,537,272 |
| Length | 95 |
| Max. P | 0.854604 |
| Location | 15,537,177 – 15,537,272 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 85.73 |
| Shannon entropy | 0.24283 |
| G+C content | 0.56269 |
| Mean single sequence MFE | -31.32 |
| Consensus MFE | -23.13 |
| Energy contribution | -23.72 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15537177 95 + 24543557 CCACACCAC-AACGCUUUCCACUUGAGAAGGCGCCCUUAGCCAUUUCACCGG----------UGGUGCCGCGCUUUCAUUGGAACACACA---AAUCGGCGAAGUGGCG-------- .........-..((((((((....).)))))))......((((((((.((((----------(.((((((.........)))..)))...---.))))).)))))))).-------- ( -31.60, z-score = -2.10, R) >droSim1.chr3L 14878405 95 + 22553184 CCACACCAC-AUCGCUUUCCACUUGAGAAGGCGCCCUUAGCCAUUUCACCGG----------UGGUGCCGCGCUUUCAUUGGAACACACA---AAUCGGAGAAGUGGCG-------- .........-..((((((((....).)))))))......((((((((.((((----------(.((((((.........)))..)))...---.))))).)))))))).-------- ( -30.40, z-score = -1.95, R) >droSec1.super_0 7651138 95 + 21120651 CCACACCAC-AUCGCUUUCCACUUGAGAAGGCGCCCUUAGCCAUUUCACCGG----------UGGUGCCGCGCUUUCAUCGGAACACACA---AAUCGGAGAAGUGGCG-------- .........-..((((((((....).)))))))......((((((((.((((----------(.((((((.........)))..)))...---.))))).)))))))).-------- ( -31.70, z-score = -2.37, R) >droYak2.chr3L 18053051 103 + 24197627 CCACACCAC-ACCGCUUUCCACUUGAGAAGGCGCCCUUAGCCAUUUCACCGG----------CGGUGCCGCGCUUUCAUUGGAACACACA---AAUCGGAGAAGUGGCGGUACGGAG ((..(((..-..((((((((....).)))))))......((((((((.((((----------((....))).......(((.......))---)..))).)))))))))))..)).. ( -36.10, z-score = -2.34, R) >droEre2.scaffold_4784 17794846 91 + 25762168 CCACACCAC-ACCGCUUUCCACUUGAGAAGGCGCCCUUAGCCAUUUCACCGG----------CGGUGCCGCGCUUUCAUUGGAACACACA---AAUCGGAGAAGU------------ .........-...(((((((......((((((((.....(((........))----------)......)))))))).(((.......))---)...)))).)))------------ ( -23.40, z-score = -0.74, R) >droAna3.scaffold_13337 6486607 104 + 23293914 -----CCACCACUGCUUUCCACUUGAGAAGGCGCCCUUAGCCAUUUCACCGGUUCGAGCAGUCGCCGCCGCGCUUUCAUUGGAACAUACACCAAAUUGAAGAAGUGGCA-------- -----.....(((((((.((...(((((.(((.......))).)))))..))...)))))))....(((((..(((((((((........))))..)))))..))))).-------- ( -34.70, z-score = -3.01, R) >consensus CCACACCAC_ACCGCUUUCCACUUGAGAAGGCGCCCUUAGCCAUUUCACCGG__________CGGUGCCGCGCUUUCAUUGGAACACACA___AAUCGGAGAAGUGGCG________ ............((((((((....).)))))))......((((((((.((((............((.(((.........))).))..........)))).))))))))......... (-23.13 = -23.72 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:10 2011