| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,530,688 – 15,530,779 |
| Length | 91 |
| Max. P | 0.887624 |
| Location | 15,530,688 – 15,530,779 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 89.20 |
| Shannon entropy | 0.22243 |
| G+C content | 0.29535 |
| Mean single sequence MFE | -13.40 |
| Consensus MFE | -9.41 |
| Energy contribution | -9.84 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15530688 91 - 24543557 UAAUGAUAAAUUUCUUUUAAUUUCUUGGAAAACUUCAAUUAUCAUUAUCGCCACCCAAGACAAAACAACUUUGUAGGACAGCGAAACUUCU (((((((((...............(((((....))))))))))))))((((...((...(((((.....))))).))...))))....... ( -14.36, z-score = -2.21, R) >droSim1.chr3L 14871911 91 - 22553184 UAAUGAUAAAUUUCUUUUAAUUUCUUGGAAAACUUCAAUUAUCAUUAUCGCCAAGCGACACAAAACAACUUUGUAGGACAGCGAAACUUCU (((((((((...............(((((....))))))))))))))((((........(((((.....)))))......))))....... ( -10.80, z-score = -0.59, R) >droSec1.super_0 7640232 91 - 21120651 UAAUGAUAAAUUUCUUUUAAUUUCUUGGAAAACUUCAAUUAUCAUUAUCGCCAAGCAAUACAAAACAACUUUGUAGGACAGCGAAACUUCU (((((((((...............(((((....))))))))))))))((((.......((((((.....)))))).....))))....... ( -13.36, z-score = -1.99, R) >droYak2.chr3L 18046551 88 - 24197627 UAAUGAUAAAUUUCUUUUAAUUUCUUGGAAAACUUCAAUUAUCAUUAUCGC---GCGACACAAAACAACUUUGUAGGACAGCGAAACUUCU (((((((((...............(((((....))))))))))))))((((---....((((((.....))))).)....))))....... ( -13.56, z-score = -1.93, R) >droEre2.scaffold_4784 17788488 88 - 25762168 UAAUGAUAAAUUUCUUUUAAUUUCUUGGAAAACUUCAAUUAUCAUUAUCGC---CCGACACAAAACAACUUUGUAGGACAGCGAAACUUCU (((((((((...............(((((....))))))))))))))((((---((...(((((.....))))).))...))))....... ( -13.16, z-score = -1.96, R) >droAna3.scaffold_13337 6478961 70 - 23293914 AAAUGAUAAAUUUCUUUUAAUUUCUUGGAAAACUCCAAUUAUCAUUAUCGC---CAAACAGAAAACAACUUCU------------------ .((((((((...............(((((....))))))))))))).....---.....((((......))))------------------ ( -7.86, z-score = -2.09, R) >dp4.chrXR_group6 13092999 88 + 13314419 UAAUGAUAAAUUUCUUUUAAUUUCUUGGAAAACUCCAAUUAUCAUUAUCGC---UCAACACAAAACAACUUUGUAGGACAGCGAAACUUCU (((((((((...............(((((....))))))))))))))((((---(...((((((.....))))).)...)))))....... ( -17.06, z-score = -4.25, R) >droPer1.super_12 1506807 88 + 2414086 UAAUGAUAAAUUUCUUUUAAUUUCUUGGAAAACUCCAAUUAUCAUUAUCGC---UCAACACAAAACAACUUUGUAGGACAGCGAAACUUCU (((((((((...............(((((....))))))))))))))((((---(...((((((.....))))).)...)))))....... ( -17.06, z-score = -4.25, R) >consensus UAAUGAUAAAUUUCUUUUAAUUUCUUGGAAAACUUCAAUUAUCAUUAUCGC___CCAACACAAAACAACUUUGUAGGACAGCGAAACUUCU (((((((((...............(((((....))))))))))))))((((........(((((.....)))))......))))....... ( -9.41 = -9.84 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:07 2011