| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,524,294 – 15,524,387 |
| Length | 93 |
| Max. P | 0.913570 |
| Location | 15,524,294 – 15,524,387 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 84.66 |
| Shannon entropy | 0.25586 |
| G+C content | 0.41790 |
| Mean single sequence MFE | -24.22 |
| Consensus MFE | -20.38 |
| Energy contribution | -20.46 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15524294 93 + 24543557 ------CAUGCUACUGCGUAUGAUCUGGAAGUCUGCUUUUGACAAAGUGAUGAUAAUGAUGAAACUGGGUCAGAACGUAGUGCUGACUUAUUUGUCUGA ------...((.(((((((.(((((..(..(((.......)))...((.((....)).))....)..)))))..))))))))).(((......)))... ( -25.60, z-score = -2.53, R) >droSim1.chr3L_random 734882 92 + 1049610 ------CAUGCUACUGCGUGUGAUCUGGAAUUCUGCUUUUGACAAAGUGAUGAUAAUGAUGGAACUGGGUCAGAACGUAGUGC-GGCUUAUUUAGCUGA ------...((.(((((((.(((((..(..((((..(.(((.((......)).))).)..)))))..)))))..)))))))))-((((.....)))).. ( -25.50, z-score = -1.88, R) >droSec1.super_0 7633807 92 + 21120651 ------CAUGCUACUGCGUGUGAUCUGGAAUUCUGCUUUUGACAAAGUGAUGAUAAUGAUGGAACUGGGUCAGAACGUAGUGC-GACUUAUUUAGCUGA ------..(((.(((((((.(((((..(..((((..(.(((.((......)).))).)..)))))..)))))..)))))))))-).............. ( -22.50, z-score = -1.19, R) >droYak2.chr3L 18040067 90 + 24197627 AUAUUUAUCACCACUGCGUGUGAUCUGGAAGUCUGCUUUUGACAAAGUGAUGAUAAUGAUGAAACUGGGUCAGAACGUAGUGC-GGCUUAU-------- ..........(((((((((.(((((..(..(((.......)))...((.((....)).))....)..)))))..)))))))).-)......-------- ( -23.90, z-score = -1.59, R) >droEre2.scaffold_4784 17782160 90 + 25762168 AUACAAAUUACUACUGCGUGUGAUCUGGAAGUCUGCUUUUGACAAAGUGAUGAUAAUGAUGAAACUGGGUCAGAACGCAGUGC-GGCUUAU-------- ...........((((((((.(((((..(..(((.......)))...((.((....)).))....)..)))))..)))))))).-.......-------- ( -23.60, z-score = -1.89, R) >consensus ______CAUGCUACUGCGUGUGAUCUGGAAGUCUGCUUUUGACAAAGUGAUGAUAAUGAUGAAACUGGGUCAGAACGUAGUGC_GGCUUAUUU__CUGA ...........((((((((.(((((..(..(((.......)))...((.((....)).))....)..)))))..))))))))................. (-20.38 = -20.46 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:06 2011