| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,506,763 – 15,506,858 |
| Length | 95 |
| Max. P | 0.612576 |
| Location | 15,506,763 – 15,506,858 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 62.02 |
| Shannon entropy | 0.64449 |
| G+C content | 0.39406 |
| Mean single sequence MFE | -21.12 |
| Consensus MFE | -7.59 |
| Energy contribution | -7.57 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15506763 95 - 24543557 UGGCGAACGUCUU---GAGGUCAGUCACU-----UUACUGUCCUUGGUU-AGAUAAAUUUAUUGGCAUGCCAUUUUGGCAAAGUAUAACUUACGUAAGAUGAUA .......((((((---((((.((((....-----..)))).))))....-..............((.((((.....))))..(((.....)))))))))))... ( -21.40, z-score = -0.68, R) >droAna3.scaffold_13337 5937188 86 + 23293914 UGCAAAAAGUCUUCAAGAGUUCAGUAACAUUUGGUUAUUGUCCUUGAAUAAAUAUUUUCCAAUUUUUGGGAAGUUCAUCGCUAGAA------------------ .((........((((((.(..(((((((.....))))))).))))))).....((((((((.....)))))))).....)).....------------------ ( -18.80, z-score = -2.15, R) >droEre2.scaffold_4784 17764679 80 - 25762168 UGGCGAACUGCUA---GAGGUCAGUCACA-----UUACUGUCCUUGGGUGAAAUAAAUUUAUUGGCAUGCCAAUCUGCUGAAGAGCGA---------------- (((((...(((((---((((.((((....-----..)))).))))..(((((.....)))))))))))))))...((((....)))).---------------- ( -21.40, z-score = -0.81, R) >droYak2.chr3L 18022067 75 - 24197627 AGGCGAAUGUCUU---GAGGUCAGUAACA-----UUACUGUCCUUGGGUAAACGAAAUUUAUUGUCGUUCUGCUAAAGCGGAA--------------------- .(((((....((.---.(((.(((((...-----.))))).)))..))((((.....))))))))).((((((....))))))--------------------- ( -22.70, z-score = -2.83, R) >droSec1.super_0 7616210 93 - 21120651 UGGCGAACCUCUU---GAGGUCAGUCACU-----UUACUGUCCUUGGUUAAAAGAAAUUUAUUGGCAUGCCAUUUUGGCAAAGUUUAACUUACGUAAGGUA--- .(((..((((...---.))))..)))(((-----((((.((....((((((((....))).......((((.....)))).....))))).))))))))).--- ( -22.70, z-score = -1.04, R) >droSim1.chr3L 14849583 76 - 22553184 UGGCGAACGUCUU---GAGGUCAGUCACU-----UUACUGUCCUUGGUU-AAAGAAAUUUAUUGGCAUGCCAUUUUGGCAAGGUA------------------- ((.(((.....(.---.(((.((((....-----..)))).)))..).(-(((....))))))).))((((.....)))).....------------------- ( -19.70, z-score = -1.07, R) >consensus UGGCGAACGUCUU___GAGGUCAGUCACA_____UUACUGUCCUUGGUUAAAAGAAAUUUAUUGGCAUGCCAUUUUGGCAAAGUA___________________ ................((((.((((...........)))).))))......................((((.....))))........................ ( -7.59 = -7.57 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:04 2011