Locus 7551

Sequence ID dm3.chr3L
Location 15,500,254 – 15,500,396
Length 142
Max. P 0.987849
window10396 window10397

overview

Window 6

Location 15,500,254 – 15,500,361
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 85.89
Shannon entropy 0.24019
G+C content 0.48696
Mean single sequence MFE -33.12
Consensus MFE -27.10
Energy contribution -27.86
Covariance contribution 0.76
Combinations/Pair 1.17
Mean z-score -2.42
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.96
SVM RNA-class probability 0.977004
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15500254 107 - 24543557
AUUCUCGCUAGGGGAGACCCAUUGGAAACACGUGGGUCAGGCGUCGGUUAUCGGCUCCAUUUUAAUUUAAAUGCCCAUUGAGGCCAUUGAGGCAUUGACUUUUCCAC
..........((..((((((((((....)).))))))).((.((((.....)))).))...........((((((((.((....)).)).))))))....)..)).. ( -36.40, z-score =  -2.31, R)
>droEre2.scaffold_4784 17756202 89 - 25762168
AUUCUCCCUA--GGAGACCCAUUGGAAACACGUGGGUCAGGCGUCGGUUAUCGACUCCUUUUUAAUUU----------AAG-----CGGAGGCAUUGAC-UUUCCAC
..(((((((.--.(((((((((((....)).)))))))(((.((((.....)))).)))......)).----------.))-----.))))).......-....... ( -30.60, z-score =  -2.87, R)
>droYak2.chr3L 18015551 95 - 24197627
AUUCUCCCUA--GGAGACCCAUUGGAAACACGUGGGUCAGGCGUCGGUUAUCGGCUCCAUUUUAAUUU----------AAAUGCCCCGGAGGCAUUGACUUUUCCAC
..........--((((((((((((....)).))))))).((.((((.....)))).))..........----------.((((((.....))))))......))).. ( -32.30, z-score =  -2.35, R)
>droSec1.super_0 7609600 105 - 21120651
AUUCUCGCUA--GGAGACCCAUGGGAAACACGUGGGUCAGGCGUCGGUUAUCGGCUCCAUUUUAAUUUAAAUGCAUUUAAAUGCCCCGGAGGCAUUGACUUUUCCAC
..........--((((((((((((....).)))))))).((.((((.....)))).)).....................((((((.....))))))......))).. ( -34.30, z-score =  -2.33, R)
>droSim1.chr3L 14841073 95 - 22553184
AUUCUCGCUA--GGAGACCUAUGGGAAACACGUGGGUCAGGCGUCGGUUAUCGGCUCCAUUUUAAUUU----------AAAUGCCCCGGAGGCAUUGACUUUUCCAC
..........--((((((((((((....).)))))))).((.((((.....)))).))..........----------.((((((.....))))))......))).. ( -32.00, z-score =  -2.22, R)
>consensus
AUUCUCGCUA__GGAGACCCAUUGGAAACACGUGGGUCAGGCGUCGGUUAUCGGCUCCAUUUUAAUUU__________AAAUGCCCCGGAGGCAUUGACUUUUCCAC
............((((((((((((....)).))))))).((.((((.....)))).)).....................((((((.....))))))......))).. (-27.10 = -27.86 +   0.76)

alignment

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secondary structure

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dotplot

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Window 7

Location 15,500,290 – 15,500,396
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 95.04
Shannon entropy 0.08431
G+C content 0.45784
Mean single sequence MFE -33.30
Consensus MFE -30.82
Energy contribution -31.14
Covariance contribution 0.32
Combinations/Pair 1.10
Mean z-score -2.68
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.30
SVM RNA-class probability 0.987849
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15500290 106 - 24543557
ACAGUAAUGCUAAUUGCUCCCGAGCAAGUAGUCUUAUUCUCGCUAGGGGAGACCCAUUGGAAACACGUGGGUCAGGCGUCGGUUAUCGGCUCCAUUUUAAUUUAAA
....(((.((((.(((((....))))).)))).)))(((((....)))))(((((((((....)).))))))).((.((((.....)))).))............. ( -35.20, z-score =  -2.77, R)
>droEre2.scaffold_4784 17756222 104 - 25762168
ACGGUAAUGCUAAUUGCUCCCGAGCAAACAGUCUUAUUCUCCCUA--GGAGACCCAUUGGAAACACGUGGGUCAGGCGUCGGUUAUCGACUCCUUUUUAAUUUAAG
..(((((.(((..(((((....)))))..))).))))).(((...--)))(((((((((....)).)))))))(((.((((.....)))).)))............ ( -31.80, z-score =  -2.57, R)
>droYak2.chr3L 18015577 104 - 24197627
ACAGUAAUGCUAAUUGCUCCCGAGCAAACAGUCUUAUUCUCCCUA--GGAGACCCAUUGGAAACACGUGGGUCAGGCGUCGGUUAUCGGCUCCAUUUUAAUUUAAA
..(((((.(((..(((((....)))))..))).))))).(((...--)))(((((((((....)).))))))).((.((((.....)))).))............. ( -31.20, z-score =  -2.44, R)
>droSec1.super_0 7609636 104 - 21120651
ACAGUAAUGCUAAUUGCUCCCGAGCAAGUAGUCUUAUUCUCGCUA--GGAGACCCAUGGGAAACACGUGGGUCAGGCGUCGGUUAUCGGCUCCAUUUUAAUUUAAA
..(((((.((((.(((((....))))).)))).))))).....((--((((((((((((....).)))))))).((.((((.....)))).)).)))))....... ( -35.30, z-score =  -3.15, R)
>droSim1.chr3L 14841099 104 - 22553184
ACAGUAAUGCUAAUUGCUCCCGAGCAAGUAGUCUUAUUCUCGCUA--GGAGACCUAUGGGAAACACGUGGGUCAGGCGUCGGUUAUCGGCUCCAUUUUAAUUUAAA
..(((((.((((.(((((....))))).)))).))))).....((--((((((((((((....).)))))))).((.((((.....)))).)).)))))....... ( -33.00, z-score =  -2.46, R)
>consensus
ACAGUAAUGCUAAUUGCUCCCGAGCAAGUAGUCUUAUUCUCGCUA__GGAGACCCAUUGGAAACACGUGGGUCAGGCGUCGGUUAUCGGCUCCAUUUUAAUUUAAA
..(((((.((((.(((((....))))).)))).)))))............(((((((((....)).))))))).((.((((.....)))).))............. (-30.82 = -31.14 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:03 2011