| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,497,707 – 15,497,827 |
| Length | 120 |
| Max. P | 0.593186 |
| Location | 15,497,707 – 15,497,827 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.33 |
| Shannon entropy | 0.19289 |
| G+C content | 0.52639 |
| Mean single sequence MFE | -33.73 |
| Consensus MFE | -25.42 |
| Energy contribution | -25.03 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15497707 120 + 24543557 UGCUCCAGCUCUCCCUCCAGGCGAGCCAUCUCCUCCAGGAACUCCUUCCGCUUGUUUUUAUUAUUUUUCGGCGCAUUCUUCUUCAUGGCCUGCAGCUUGGCCUGCAAAUCCUUGCGCUCG .((....((((.((.....)).))))...........((((....))))))..................((((((........((.((((........))))))........)))))).. ( -29.29, z-score = -0.48, R) >droPer1.super_12 1472650 120 - 2414086 UGCUCCAGCUCACUCUCCAGGCGUGACAUCUCCUCUAGGAACUCCUUGCGCUUGGAUUUAUUGUUCUUGGGCGCAUUCUUCUUCAUGGCCUGCAACUUGGCCUGAAGUUCUUUGCGCUCG .((....))......((((((((..(....(((....))).....)..))))))))............(((((((.....(((((.((((........))))))))).....))))))). ( -45.60, z-score = -4.68, R) >dp4.chrXR_group6 13060186 120 - 13314419 UGCUCCAGCUCACUCUCCAGGCGUGACAUCUCCUCUAGGAACUCCUUGCGCUUGGUUUUAUUGUUCUUGGGCGCAUUCUUCUUCAUGGCCUGCAACUUGGCCUGAAGUUCUUUGCGCUCG ......(((.......(((((((..(....(((....))).....)..))))))).......)))...(((((((.....(((((.((((........))))))))).....))))))). ( -43.84, z-score = -4.31, R) >droSec1.super_0 7607034 120 + 21120651 UGCUCCAGCUCUCCCUCCAGGCGAGCCAUCUCCUCCAGGAACUCCUUCCGCUUGUUUUUAUUAUUUUUCGGCGCAUUCUUCUUCAUGGCCUGCAGCUUGGCCUGCAAAUCCUUGCGCUCG .((....((((.((.....)).))))...........((((....))))))..................((((((........((.((((........))))))........)))))).. ( -29.29, z-score = -0.48, R) >droSim1.chr3L 14838463 120 + 22553184 UGCUCCAGCUCUCCCUCCAGGCGAGCCAUCUCCUCCAGGAACUCCUUCCGCUUGUUUUUAUUAUUUUUCGGCGCAUUCUUCUUCAUGGCCUGCAGCUUGGCCUGCAAAUCCUUGCGCUCG .((....((((.((.....)).))))...........((((....))))))..................((((((........((.((((........))))))........)))))).. ( -29.29, z-score = -0.48, R) >droVir3.scaffold_13049 20275195 120 + 25233164 UGUUCCAGUUCACCCUCUAGACGCGCCAUCUCCUCCAGGAACUCCUUGCGUUUAUUUUUGUUAUUCUUCGGCGCAUUCUUCUUCAUUGCCUGCAAUUUGGCUUGCAGCUCUUUGCGCUCA .................((((((((.....(((....)))......))))))))...............((((((.....((.((..(((........))).)).)).....)))))).. ( -25.10, z-score = -0.77, R) >consensus UGCUCCAGCUCACCCUCCAGGCGAGCCAUCUCCUCCAGGAACUCCUUCCGCUUGUUUUUAUUAUUCUUCGGCGCAUUCUUCUUCAUGGCCUGCAACUUGGCCUGCAAAUCCUUGCGCUCG .................((((((.......(((....)))........))))))...............((((((........((.((((........))))))........)))))).. (-25.42 = -25.03 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:02 2011