| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,309,970 – 5,310,020 |
| Length | 50 |
| Max. P | 0.997184 |
| Location | 5,309,970 – 5,310,020 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 89.33 |
| Shannon entropy | 0.14693 |
| G+C content | 0.62667 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -24.63 |
| Energy contribution | -24.63 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.27 |
| SVM RNA-class probability | 0.987149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5309970 50 + 23011544 AGGGCCAGGUCUGGACCACAAGGAUUUGACACAAGACCCUGUGGCCCGAA .(((((.(((....)))(((.((.((((...)))).)).))))))))... ( -19.10, z-score = -1.62, R) >droSec1.super_5 3389074 50 + 5866729 AGGGCCAGGUCUGGACCACAGGGACUGGACUCCAGGCCCUGUGGACCAAA .((.(((....))).((((((((.((((...)))).)))))))).))... ( -26.10, z-score = -2.02, R) >droSim1.chr2L 5109704 50 + 22036055 AGGGCCAGGUCUGGACCACAGGGACUGGACUCCAGGCCCUGUGGCCCAAA .(((((.(((....)))((((((.((((...)))).)))))))))))... ( -30.20, z-score = -2.85, R) >consensus AGGGCCAGGUCUGGACCACAGGGACUGGACUCCAGGCCCUGUGGCCCAAA .(((((.(((....)))((((((.((((...)))).)))))))))))... (-24.63 = -24.63 + 0.00)
| Location | 5,309,970 – 5,310,020 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 89.33 |
| Shannon entropy | 0.14693 |
| G+C content | 0.62667 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -25.90 |
| Energy contribution | -26.23 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.05 |
| SVM RNA-class probability | 0.997184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5309970 50 - 23011544 UUCGGGCCACAGGGUCUUGUGUCAAAUCCUUGUGGUCCAGACCUGGCCCU ...(((((((((((..(((...)))..)))))))))))............ ( -21.30, z-score = -2.32, R) >droSec1.super_5 3389074 50 - 5866729 UUUGGUCCACAGGGCCUGGAGUCCAGUCCCUGUGGUCCAGACCUGGCCCU (((((.((((((((.((((...)))).)))))))).)))))......... ( -27.80, z-score = -3.20, R) >droSim1.chr2L 5109704 50 - 22036055 UUUGGGCCACAGGGCCUGGAGUCCAGUCCCUGUGGUCCAGACCUGGCCCU ((((((((((((((.((((...)))).))))))))))))))......... ( -31.10, z-score = -3.51, R) >consensus UUUGGGCCACAGGGCCUGGAGUCCAGUCCCUGUGGUCCAGACCUGGCCCU ((((((((((((((.((((...)))).))))))))))))))......... (-25.90 = -26.23 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:46 2011