Locus 7549

Sequence ID dm3.chr3L
Location 15,495,073 – 15,495,214
Length 141
Max. P 0.514247
window10394

overview

Window 4

Location 15,495,073 – 15,495,214
Length 141
Sequences 3
Columns 141
Reading direction reverse
Mean pairwise identity 91.61
Shannon entropy 0.11544
G+C content 0.35535
Mean single sequence MFE -30.23
Consensus MFE -26.84
Energy contribution -26.73
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -1.33
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.04
SVM RNA-class probability 0.514247
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15495073 141 - 24543557
GUACUCAUUCACUUGCUGCCAUAUGGCACUUUAUGAUCUUUUGAGAUGUUCAAAACAAACAGUGGAAAGUUUACGAUUUAAAAAUAAAAAGGUAAAUUCCUCGAGAGUUCAUCUACAUUUAGUGCUUUAGCCAGCAGGAAU
...........(((((((...((.((((((..((((.((((((((...(((...((.....)).)))(((((((..(((........))).))))))).)))))))).))))........)))))).))..)))))))... ( -33.00, z-score =  -1.82, R)
>droSec1.super_0 7604452 135 - 21120651
------ACUCACUUGCUGCCAUAUGGCACUUUAUAAUCUUUUGAGAUGUUCAAAACAAACAGUGGAAAGUUUACGAUUUAAAAAUAAAAAGGUAAAUGCCACGAGAGUUCAUCCACAUUUAGUGUUUUAGACAGCCGGAAU
------.....((.((((...((..(((((..((....(((((((...)))))))......(((((........................(((....)))((....))...)))))))..)))))..))..)))).))... ( -26.60, z-score =  -0.61, R)
>droSim1.chr3L 14835778 135 - 22553184
------ACUCACUUGCUGCCAUAUGGCACUUUAUCAUCUUUUGAGAUGCACAAAACAAACAGUGGAAAGUUUACGAUUUAAAAAUAAAAAGGUAAAUGCCACGAGAGUUCGUCCACAUUUAGUGUUUUAGCCAGCAGGAAU
------.....(((((((...((..(((((..(((((((....))))).............(((((........................(((....)))((....))...)))))))..)))))..))..)))))))... ( -31.10, z-score =  -1.55, R)
>consensus
______ACUCACUUGCUGCCAUAUGGCACUUUAUAAUCUUUUGAGAUGUUCAAAACAAACAGUGGAAAGUUUACGAUUUAAAAAUAAAAAGGUAAAUGCCACGAGAGUUCAUCCACAUUUAGUGUUUUAGCCAGCAGGAAU
...........(((((((...((..(((((..((.((((....))))..............(((((..((((((..(((........))).))))))....(....)....)))))))..)))))..))..)))))))... (-26.84 = -26.73 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:01 2011