| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,492,156 – 15,492,256 |
| Length | 100 |
| Max. P | 0.702677 |
| Location | 15,492,156 – 15,492,256 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 125 |
| Reading direction | reverse |
| Mean pairwise identity | 68.57 |
| Shannon entropy | 0.61790 |
| G+C content | 0.41043 |
| Mean single sequence MFE | -23.94 |
| Consensus MFE | -7.33 |
| Energy contribution | -7.42 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.702677 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15492156 100 - 24543557 ---------------------UUGGUCUUUCUU--CGUAUAUG--AACUUACUUUUGUGCUGUUGCAGUUUGGUUUCUCGGACAUAGUUAUCCGGAUUGCGACUAAUCAUUUUCACCUUCAUCCU ---------------------..(((.......--.(((((.(--(......)).))))).((((((((((((...((.......))....))))))))))))...........)))........ ( -19.10, z-score = -0.95, R) >droMoj3.scaffold_6680 7972949 102 - 24764193 --------------------ACAUAGUCA-ACA--AUUGUCUAAUAUCUUACUUUUAUGUUGCUGCAGUUUGGUUUCCCGGACAUAGUUGUCCGGGUUGCGACUUAUCAUUUUCACUUUCAUAUU --------------------....((((.-.((--(((((.((((((.........))))))..)))).)))((..((((((((....))))))))..))))))..................... ( -25.20, z-score = -3.32, R) >droVir3.scaffold_13049 20269785 120 - 25233164 UCCAUCUUGACAACAGCAAGCAUAAAUUAGUUU--GCUGUGCG---ACUAACCUUUGUGUUGCUGCAGCUUGGUUUCCCGGACAUAAUUGUCCGGGUUGCGACUUAUCAUUUUCACCUUCAUUUU ..((..(((.(((((((((((........))))--)))))(((---((..........))))))))))..))((..((((((((....))))))))..))......................... ( -38.20, z-score = -4.03, R) >droWil1.scaffold_180955 2424339 111 + 2875958 --------------UUUUGUUUGUGUCUGGAUGGAGCUAUCUAUAUAGUUACCUUUGUGUUGUUGCAGUUUCGUCUCACGGACAUAAUUGUCCGGAUUGCGACUUAACAUUUUCACCUUCAUUUU --------------........(((...((..((((((((....)))))).))..(((...(((((((((........((((((....)))))))))))))))...)))......))..)))... ( -27.90, z-score = -2.41, R) >droAna3.scaffold_13337 5923177 97 + 23293914 ----------------------AUUGUCGUGUU--AUUGUCUA----CUCACUUUUGUGAUGCUCCAGUUUUGUCUCCCGGACAUAGUUGUCCGGAUUACGGCUUAUCAUUUUCACCUUCAUCCU ----------------------...((((((..--((((....----.((((....)))).....))))........(((((((....)))))))..))))))...................... ( -22.90, z-score = -2.91, R) >droYak2.chr3L 18007367 100 - 24197627 ---------------------UUCAACUUUCUG--CUUAUUUG--AACUUACUUUUGUGCUGCUGCAGUUUGGUUUCUCGGACAUAAUUAUCCGGAUUGCGACUGAUCAUUUUCACCUUCAUCCU ---------------------...((((..(((--(.......--.((........))......))))...))))....(((........)))((((......(((......))).....)))). ( -13.14, z-score = 0.59, R) >droEre2.scaffold_4784 17748124 99 - 25762168 ---------------------CUCAAC-UCCUG--CUUAUUUG--CGCUUACUUUUGUGCUGUUGCAGUUUGGUUUCCCGGACAUAGUUAUCCGGGUUGCGACUAAUCAUUUUCACCUUCAUUCU ---------------------......-..(((--(......(--(((........))))....)))).((((((.((((((........))))))....))))))................... ( -23.80, z-score = -2.52, R) >droSec1.super_0 7601508 100 - 21120651 ---------------------UUGGUCUUCCUU--CGUAUAUG--AACUUACUUUUGUGCUGUUGCAGUUUGGUUUCUCGGACAUAGUUAUCCGGAUUGCGACUAAUCAUUUUCACCUUCAUCCU ---------------------..(((.......--.(((((.(--(......)).))))).((((((((((((...((.......))....))))))))))))...........)))........ ( -19.10, z-score = -0.86, R) >triCas2.ChLG2 11339603 105 + 12900155 --------------------UCUAACUCUUUUCUCAAACUUCAUAUACGCACCUUUAUGAAUAUCAUGUUUUGUCUCUCUGAGGUAAUCGUCCGGGUUCCUACUAAUCACUUUUACCUUCAUUUU --------------------...................((((((..........))))))...................(((((((..((...(((....)))....))..)))))))...... ( -11.20, z-score = -0.76, R) >droPer1.super_12 1467656 98 + 2414086 ---------------GCUGGC-UAGGGCA--UU--ACUGUG-G---ACUCACUUUUGUGUUGCUGCAGCUUGGUUUCCCGGACAUAGUUGUCCGGGUUGCGACUUAUCAUUUUAACCUUCAU--- ---------------.(.(((-(..((((--.(--((.(((-.---...)))....))).))))..)))).)((..((((((((....))))))))..))......................--- ( -31.40, z-score = -2.07, R) >dp4.chrXR_group6 13055240 98 + 13314419 ---------------GCUGGC-UAGGGCA--UU--ACUGUG-G---ACUCACUUUUGUGUUGCUGCAGCUUGGUUUCCCGGACAUAGUUGUCCGGGUUGCGACUUAUCAUUUUAACCUUCAU--- ---------------.(.(((-(..((((--.(--((.(((-.---...)))....))).))))..)))).)((..((((((((....))))))))..))......................--- ( -31.40, z-score = -2.07, R) >consensus _____________________UUAAGCCUUCUU__ACUAUCUG___ACUUACUUUUGUGUUGCUGCAGUUUGGUUUCCCGGACAUAGUUGUCCGGGUUGCGACUUAUCAUUUUCACCUUCAUCCU ...............................................................((((((........(((((........)))))))))))........................ ( -7.33 = -7.42 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:29:00 2011