| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,479,004 – 15,479,062 |
| Length | 58 |
| Max. P | 0.735778 |
| Location | 15,479,004 – 15,479,062 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 83.36 |
| Shannon entropy | 0.29977 |
| G+C content | 0.42331 |
| Mean single sequence MFE | -13.62 |
| Consensus MFE | -9.58 |
| Energy contribution | -10.66 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.735778 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15479004 58 + 24543557 CAUACAGUGUUCGGAGAACUGAAAGCAUUGCAAGAUGCUGCAGGAUUUAAAGGACAAA .......(((((.(((..(((..((((((....)))))).)))..)))...))))).. ( -15.10, z-score = -2.65, R) >droEre2.scaffold_4784 17733280 53 + 25762168 ----UCGUCUUCGGAGAACUGAAAGCAUUGCAAGAUGCUGCAGGGGUUAAAGGACAA- ----..(((((..((...(((..((((((....)))))).)))...))..)))))..- ( -14.60, z-score = -1.73, R) >droYak2.chr3L 17993375 55 + 24197627 --UAAAGUCUUCGGAUAACUGAAAGCAUUGCAAGAUGCUGCAAAGGUUAAAGGACAA- --....(((((....(((((...((((((....)))))).....))))).)))))..- ( -13.70, z-score = -2.44, R) >droSec1.super_0 7587629 58 + 21120651 UAUACAGUCUUCGGAAAACUGAAAGCAUUGCAAGUUGCUGCAGGGGUUAAAGGACACA ......(((((..((...(((..((((........)))).)))...))..)))))... ( -13.50, z-score = -1.36, R) >droSim1.chr3L 14819020 55 + 22553184 UAUACAGUUUUUGGAGAACUGAAAGCAUUGCAAGU-GCUGCAGGG--UAAAGGACACA ......((((((...(..(((..(((((.....))-))).)))..--).))))))... ( -11.20, z-score = -0.67, R) >consensus _AUACAGUCUUCGGAGAACUGAAAGCAUUGCAAGAUGCUGCAGGGGUUAAAGGACAAA ......(((((..((...(((..((((((....)))))).)))...))..)))))... ( -9.58 = -10.66 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:57 2011