| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,476,123 – 15,476,217 |
| Length | 94 |
| Max. P | 0.559890 |
| Location | 15,476,123 – 15,476,217 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 74.75 |
| Shannon entropy | 0.49947 |
| G+C content | 0.46154 |
| Mean single sequence MFE | -23.92 |
| Consensus MFE | -12.69 |
| Energy contribution | -12.44 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15476123 94 - 24543557 -------CCACCGCAUUUCUUUUGGCCAAUGCCAAUGCGUUUAAACAACAGUUUAACAGCAGUUUGCCUCCCUUUUGUUAUUGGUGAGGCUUUCGCCUUUU------------------ -------.....((.......(((((....)))))(((..((((((....))))))..)))(...(((((((..........)).)))))...))).....------------------ ( -24.00, z-score = -1.99, R) >droSim1.chr3L 14816225 94 - 22553184 -------CCACCGCAUUUCUUUUGGCCAAUGCCAAUGCGUUUAAACAACAGUUUAACAGCAGUUUGCCUCCCUUUUGUUAUUGGUGAGGCUUUCGCCUUUU------------------ -------.....((.......(((((....)))))(((..((((((....))))))..)))(...(((((((..........)).)))))...))).....------------------ ( -24.00, z-score = -1.99, R) >droSec1.super_0 7584848 89 - 21120651 -------CCACCGCAUUUCUCUUGCCCAAUGCCAAUGCGUUUAAACAACAGUUUAACAGCAGUUUGCCUCCCUUUUGUUAUUGGUGA---UUUCAUUUU-------------------- -------.(((((((.......))).....((...(((..((((((....))))))..)))....))...............)))).---.........-------------------- ( -15.70, z-score = -1.37, R) >droYak2.chr3L 17990883 93 - 24197627 --------CCACCGCUUUCUUUUGCCCAACACCAAUGCGUUUAAACAACAGUUUAACAGCAGUUUGCCAGCCUUUUGUUAUUGGUGAGGCUUUUGCCUUUG------------------ --------.....((........))....(((((((((..((((((....))))))..))........(((.....))))))))))((((....))))...------------------ ( -19.50, z-score = -0.55, R) >droEre2.scaffold_4784 17730705 93 - 25762168 -------CCACCGCAUUUCUUUUGCCCAAUGCCAAUGCGUUUAAACAACAGUUUAACAGCAG-UUGCCAGCCUUUUGUUAUUGGCGAGGCUCUUGGCUUUU------------------ -------.....(((.......))).....((((((((..((((((....))))))..))).-..(((.(((..........)))..)))..)))))....------------------ ( -23.90, z-score = -0.98, R) >droAna3.scaffold_13337 5908638 96 + 23293914 ------UCUCCGCCACAUCUUUCGCCCACUGCCAAUGCGUUUAAACAACAGUUUAACAGCAGUUUGCCUGGCUUUUGUUAUUGGUGAGGCUUUUGCCUUUUG----------------- ------....(((((........(((....((...(((..((((((....))))))..)))....))..))).........)))))((((....))))....----------------- ( -22.33, z-score = -0.71, R) >dp4.chrXR_group6 13032411 112 + 13314419 -------CCCCCGACUCGGCCUGCCCCACUGCCAAUGCGUUUAAACAACAGUUUAACAACAGUUUGCCUGCCUUUUGUUAUUGGUGAGGCUUUCGCCUCUUUGCCGCACUGCCGCACCG -------....((...((((.(((......(((((((((((.((((....)))))))..(((.....)))......).)))))))(((((....)))))......)))..))))...)) ( -27.10, z-score = -0.71, R) >droPer1.super_12 1450216 112 + 2414086 -------CCCUCGACUCGGCCUGCCCCACUGCCAAUGCGUUUAAACAACAGUUUAACAACAGUUUGCCUGCCUUUUGUUAUUGGUGAGGCUUUCGCCUCUUUGCCGCACUGCCGCACCG -------.........((((.(((......(((((((((((.((((....)))))))..(((.....)))......).)))))))(((((....)))))......)))..))))..... ( -26.90, z-score = -0.57, R) >droWil1.scaffold_180955 2398866 95 + 2875958 -------ACCCCUUUUUUCUUGCCACCCAUUUCAAUGCGUUUAAACAACAGUUUAACAGCAGUUUGCCAGCCUUUUGUUAUUGGUGAGGCUUUUGCUUUUGC----------------- -------..............(((...........(((..((((((....))))))..)))..(..((((..........))))..))))............----------------- ( -15.70, z-score = 0.36, R) >droVir3.scaffold_13049 20252322 106 - 25233164 GCUGCCGCCGCCUCAUCCCGCUUGCUUGUUGCCAAUGCGUUUAAACAACAGUUUAACGGCAGUUUGCCUGCCUUUUGUUAUUGGUGAGGCUUUCGCUUCUGCAUUU------------- ((.((....((((((((.(((..((.....))....))).((((((....)))))).(((((.....)))))..........))))))))....))....))....------------- ( -30.60, z-score = -1.09, R) >droMoj3.scaffold_6680 7956836 102 - 24764193 ----CUCCCGCCUCCUGCUCCGCUCCCACUGGCAAUGCGUUUAAACAACAGUUUAACAGCAGUUUCCCUGCCUUUUGUUAUUGGUGAGGCUUUCGCUUCUGCAUUU------------- ----.....(((((..((...))..(((.((((((...(((.((((....))))))).((((.....))))...)))))).))).)))))....((....))....------------- ( -23.40, z-score = -0.88, R) >droGri2.scaffold_15110 4649626 97 + 24565398 -------CCACCUUCUAU--CAAUUUGGCUGGCAAUGCGUUUAAACAACAGUUUAACAGCAGUUUGCCAGCCUUUUGUUAUUGGUGAGGCUUUUGCUUUUGCAUUU------------- -------.((((......--(((...((((((((((((..((((((....))))))..)))..)))))))))..))).....))))((((....))))........------------- ( -33.90, z-score = -3.93, R) >consensus _______CCACCGCAUUUCUCUUGCCCAAUGCCAAUGCGUUUAAACAACAGUUUAACAGCAGUUUGCCUGCCUUUUGUUAUUGGUGAGGCUUUCGCCUUUU__________________ ..............................((((((..(((.((((....)))))))(((((............)))))))))))(((((....))))).................... (-12.69 = -12.44 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:56 2011