| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,461,978 – 15,462,047 |
| Length | 69 |
| Max. P | 0.522236 |
| Location | 15,461,978 – 15,462,047 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 94.90 |
| Shannon entropy | 0.09669 |
| G+C content | 0.31080 |
| Mean single sequence MFE | -9.53 |
| Consensus MFE | -8.66 |
| Energy contribution | -9.05 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15461978 69 + 24543557 -AAACCCAAACCACCUGGACAUAAUUUUGAAUUAUGUUUAUUAUGUUUGCCUCAAAAAGUUGCCUUUUUU -.....(((((....((((((((((.....))))))))))....)))))....((((((....)))))). ( -11.00, z-score = -1.88, R) >droSim1.chr3L 14801190 69 + 22553184 -AAACCCAAACCACCUGGACAUAAUUUUGAAUUAUGUUUAUUAUGUUUGCCUCAAAAAGUUGCCUUUUUU -.....(((((....((((((((((.....))))))))))....)))))....((((((....)))))). ( -11.00, z-score = -1.88, R) >droSec1.super_0 7568190 69 + 21120651 -AAACCCAAACCACCUGGACAUAAUUUUGAAUUAUGUUUAUUAUGUUUGCCUCAAAAAGUUGCCUUUUUU -.....(((((....((((((((((.....))))))))))....)))))....((((((....)))))). ( -11.00, z-score = -1.88, R) >droYak2.chr3L 17978077 69 + 24197627 -AAACCCAAACCACCUGGACAUAAUUUUGAAUUAUGUUUAUUAUGUUUGCCUCAAAAAGUUGCCUUUUUC -.....(((((....((((((((((.....))))))))))....)))))....((((((....)))))). ( -11.00, z-score = -1.86, R) >droEre2.scaffold_4784 17717961 69 + 25762168 -AAACCCAAACCACCUGGACAUAAUUUUGAAAUAUGUUUAUUAUGUUUGCCUCAAAAAGUUGCCUUUUUU -.....(((((....((((((((.........))))))))....)))))....((((((....)))))). ( -8.20, z-score = -0.59, R) >droAna3.scaffold_13337 5896277 70 - 23293914 AAGACCCCAGCCACCUGAAAAUAAUUUUGAAUUAUGUUUAUUAUGUUUGUCUCAAAAAGUUGCCGUUUUC (((((..((((....((((((((....(((((...)))))...)))))...)))....))))..))))). ( -5.00, z-score = 0.49, R) >consensus _AAACCCAAACCACCUGGACAUAAUUUUGAAUUAUGUUUAUUAUGUUUGCCUCAAAAAGUUGCCUUUUUU ......(((((....((((((((((.....))))))))))....)))))....((((((....)))))). ( -8.66 = -9.05 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:54 2011