| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,447,537 – 15,447,635 |
| Length | 98 |
| Max. P | 0.815791 |
| Location | 15,447,537 – 15,447,635 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 95.35 |
| Shannon entropy | 0.08350 |
| G+C content | 0.45695 |
| Mean single sequence MFE | -26.88 |
| Consensus MFE | -23.28 |
| Energy contribution | -23.48 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15447537 98 + 24543557 ACGGAUUCGCUUGUAUAUGC----UAGCUGCUUUCUCCACUUCUGCUUCUUCUUUUUUGCCAAUUGUCCUUUUGGCUAAGGGGAUUGGCCCGAAAUCCGUAA (((((((((((.((....))----.)))................(((...(((((((.(((((........))))).)))))))..)))..).))))))).. ( -26.90, z-score = -2.22, R) >droSim1.chr3L 14786337 96 + 22553184 ACGGAUUCGCUUGUAU--GC----UAGCUGCUUUCUCCACUUCUGCUUCUUCUUUUUUGCCAAUUGUCCUUUUGGCUAAGGGGAUUGGCCCGAAAUCCGUAA (((((((((((.(...--.)----.)))................(((...(((((((.(((((........))))).)))))))..)))..).))))))).. ( -26.10, z-score = -1.91, R) >droSec1.super_0 7553966 96 + 21120651 ACGGAUUCGCUUGUAU--GC----UAGCUGCUUUCUCCACUUCUGCUUCUUCUUUUUUGCCAAUUGUCCUUUUGGCUAAGGGGAUUGGCCCGAAAUCCGUAA (((((((((((.(...--.)----.)))................(((...(((((((.(((((........))))).)))))))..)))..).))))))).. ( -26.10, z-score = -1.91, R) >droYak2.chr3L 17963486 102 + 24197627 ACGGAUUCGCUUGUACGAGCAUUCUAGCUGCUUUCUCCACUUCAGCUUCUUCUUUUUUGCCAAUUGUCCUUUUGGCUAAGGGGAUUGGCCCGAAAUCCGUAA ((((((((((((....)))).....(((((............)))))...........(((((((.(((((......))))))))))))..).))))))).. ( -28.60, z-score = -1.86, R) >droEre2.scaffold_4784 17704024 96 + 25762168 ACGGAUUCGCUUGUAU--GC----UAGCUGCUGUCUCCACUUCUGAUUCUUCUUUUUUGCCAAUUGUCCUUUUGGCUAAGGGGAUUGGCCCGAAAUCCGUAA (((((((((((.(...--.)----.))).(((((((((......((....))......(((((........)))))...))))).))))..).))))))).. ( -26.70, z-score = -2.00, R) >consensus ACGGAUUCGCUUGUAU__GC____UAGCUGCUUUCUCCACUUCUGCUUCUUCUUUUUUGCCAAUUGUCCUUUUGGCUAAGGGGAUUGGCCCGAAAUCCGUAA (((((((((((..............)))................(((...(((((((.(((((........))))).)))))))..)))..).))))))).. (-23.28 = -23.48 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:53 2011