| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,441,245 – 15,441,339 |
| Length | 94 |
| Max. P | 0.709011 |
| Location | 15,441,245 – 15,441,339 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 70.34 |
| Shannon entropy | 0.55817 |
| G+C content | 0.39326 |
| Mean single sequence MFE | -13.98 |
| Consensus MFE | -7.84 |
| Energy contribution | -8.18 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.709011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15441245 94 - 24543557 UUUUGAUACACUCUAUCCCACAGACAGCUUGCUCAAUCUUGAACCCU-------------UCCUUCUGCUUCGUUAUUUAUAAAUAUCAAUUAAUGGAGCAUCCCUU- ..((((..((..((.((.....)).))..)).))))...........-------------......((((((((((...............))))))))))......- ( -10.86, z-score = -0.67, R) >droSim1.chr3L 14780023 94 - 22553184 UUUCGAUACACUCUAUUCCACAGACAGCUUACGCAAUCUUGAGCCGC-------------UCCUUCUGCUUCGUUAUUUAUAAAUAUCAAUUAAUGGAGCACCCCUU- ......................(((.(((((........))))).).-------------))....((((((((((...............))))))))))......- ( -13.46, z-score = -1.02, R) >droSec1.super_0 7547630 94 - 21120651 UUUCGAUACACUCUAUUCCACAGACAGCUUACUCAAUCUUGAAUCCU-------------UUCUGGCGCUUCGUUAUUUAUAAAUAUCAAUUAAUGGAGCACCCCUU- ....................((((.((.....(((....)))...))-------------.))))..(((((((((...............))))))))).......- ( -13.46, z-score = -1.37, R) >droYak2.chr3L 17955868 107 - 24197627 UUUCGGUACACUCCAUCCCACAGACAGCUCACUCAAUCUUGAGUCCUUGCUUCUUAAGAGUCCUGCUGCUUCGUUAUCUAUAAAUAUCAAUUAAUGGAGCACCCCUU- ....(((..((((........(((.(((..(((((....)))))....))))))...))))......(((((((((...............))))))))))))....- ( -20.06, z-score = -1.45, R) >droEre2.scaffold_4784 17697346 106 - 25762168 UUUCGGUGCACUCUAUCCCACAGACAGCUGCCUCAAUCUUGAAGUCUU-CCUCUGAAGAGUCCUUCUGCUUCGUUAUUUAUAAAUAUCAAUUAAUGGAGCACCCCUU- ....(((((..(((.......)))..)).)))........((((((((-(....)))))...))))((((((((((...............))))))))))......- ( -20.46, z-score = -1.10, R) >droAna3.scaffold_13337 5877439 73 + 23293914 -----------------------------------GUCUGGUACCAUCCCUCCUUAAUAUUCUUUGUGCUUCUUUAUUUAUAAAUAUCAAUUAAUGGCGCACCUCCUU -----------------------------------....((......))...............((((((...(((...............))).))))))....... ( -5.56, z-score = -0.10, R) >consensus UUUCGAUACACUCUAUCCCACAGACAGCUUACUCAAUCUUGAACCCU_____________UCCUUCUGCUUCGUUAUUUAUAAAUAUCAAUUAAUGGAGCACCCCUU_ ...................................................................(((((((((...............)))))))))........ ( -7.84 = -8.18 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:52 2011