| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,437,894 – 15,437,952 |
| Length | 58 |
| Max. P | 0.998936 |
| Location | 15,437,894 – 15,437,952 |
|---|---|
| Length | 58 |
| Sequences | 10 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 76.08 |
| Shannon entropy | 0.50225 |
| G+C content | 0.47394 |
| Mean single sequence MFE | -19.12 |
| Consensus MFE | -13.55 |
| Energy contribution | -13.99 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.56 |
| SVM RNA-class probability | 0.998936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15437894 58 + 24543557 UUAGUCGAGGUGCUCAAGCAGGCAACUUAAUGAGCACUGACAGUCGUCGACAGAACUA----- ...(((..((((((((...((....))...))))))))(((....)))))).......----- ( -21.00, z-score = -3.08, R) >droSim1.chr3L 14776551 58 + 22553184 UUAGUCGAGGUGCUCAAGCAGGCAACUUAAUGAGCACUGACAGUCGUCGACAGAACUA----- ...(((..((((((((...((....))...))))))))(((....)))))).......----- ( -21.00, z-score = -3.08, R) >droSec1.super_0 7544210 50 + 21120651 UUAGUCGAG-UGCUCAAGCAGGCAACUUAAUGAGCACUGACAGUCGUCGAC------------ ...(((.((-((((((...((....))...))))))))(((....))))))------------ ( -19.40, z-score = -3.33, R) >droYak2.chr3L 17952455 58 + 24197627 UUAGUCGAGGUGCUCAAGCAGGCAACUUAAUGAGCACUGACAGUCGUCGACAGAACUA----- ...(((..((((((((...((....))...))))))))(((....)))))).......----- ( -21.00, z-score = -3.08, R) >droEre2.scaffold_4784 17694055 58 + 25762168 UUAGUCGAGGUGCUCAAGCAGGCAACUUAAUGAGCACUGACAGUCGUCGACAGAACUA----- ...(((..((((((((...((....))...))))))))(((....)))))).......----- ( -21.00, z-score = -3.08, R) >droAna3.scaffold_13337 5874521 50 - 23293914 UUUGUCGAGGUGCUCAAGCAGGCAACUUAAUGAGCAC--------GUCGACGGAACUA----- ((((((((.(((((((...((....))...)))))))--------.))))))))....----- ( -26.20, z-score = -6.21, R) >dp4.chrXR_group6 12991696 58 - 13314419 UUUGUCGGGGUGCUCAAGCAGACAACUUAAUGUGCAUUGACUGUCGCUGACAAAACUA----- (((((((((..(.(((((((.(........).))).)))).)..).))))))))....----- ( -16.40, z-score = -1.74, R) >droPer1.super_12 1410774 58 - 2414086 UUUGUCGGGGUGCUCAAGCAGACAACUUAAUGUGCAUUGACUGUCGCUGACAAAACUA----- (((((((((..(.(((((((.(........).))).)))).)..).))))))))....----- ( -16.40, z-score = -1.74, R) >droMoj3.scaffold_6680 7917170 61 + 24764193 UGCAGCAAGGUGUUCAAGCAGGCGACUUAAUGAGCGCUGACUA--UUAUGCAGCAUGGAAAUA (((.(((.((((((((...((....))...)))))))).....--...))).)))........ ( -14.90, z-score = 0.00, R) >droGri2.scaffold_15110 4613731 53 - 24565398 ---UCAAAGGUGCUCAAGCAGGCGACUUAAUGAGCACUGACUGC-UUAAUCGAAAUG------ ---.....((((((((...((....))...))))))))......-............------ ( -13.90, z-score = -1.79, R) >consensus UUAGUCGAGGUGCUCAAGCAGGCAACUUAAUGAGCACUGACAGUCGUCGACAGAACUA_____ ...(((((((((((((...((....))...))))))))........)))))............ (-13.55 = -13.99 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:51 2011