| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,425,079 – 15,425,140 |
| Length | 61 |
| Max. P | 0.979919 |
| Location | 15,425,079 – 15,425,140 |
|---|---|
| Length | 61 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 99.34 |
| Shannon entropy | 0.01183 |
| G+C content | 0.49344 |
| Mean single sequence MFE | -14.30 |
| Consensus MFE | -14.30 |
| Energy contribution | -14.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.13 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.977452 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15425079 61 + 24543557 AUUGCACCGUGAAGCAGCAAAGGUGCAGACGAUAAGAAGAGGGCAGAUUAGCCAAAGAUGG .(((((((.((......))..))))))).............(((......)))........ ( -14.30, z-score = -2.14, R) >droSim1.chr3L 14762221 61 + 22553184 AUUGCACCGUGAAGCAGCAAAGGUGCAGACGAUAAGAAGAGGGCAGAUUAGCCAAAGAUGG .(((((((.((......))..))))))).............(((......)))........ ( -14.30, z-score = -2.14, R) >droSec1.super_0 7531340 61 + 21120651 AUUGCACCGUGAAGCAGCAAAGGUGCAGACGAUAAGAAGAGGGCAGAUUAGCCAAAGAUGG .(((((((.((......))..))))))).............(((......)))........ ( -14.30, z-score = -2.14, R) >droEre2.scaffold_4784 17681216 60 + 25762168 AUUGCACCGUGAAGCAGCAAAGGUGCAGACGAUAAGAAGAGGGCAGAUUAGCCAA-GAUGG .(((((((.((......))..))))))).............(((......)))..-..... ( -14.30, z-score = -2.08, R) >droYak2.chr3L 17939220 61 + 24197627 AUUGCACCGUGAAGCAGCAAAGGUGCAGACGAUAAGAAGAGGGCAGAUUAGCCAAAGAUGG .(((((((.((......))..))))))).............(((......)))........ ( -14.30, z-score = -2.14, R) >consensus AUUGCACCGUGAAGCAGCAAAGGUGCAGACGAUAAGAAGAGGGCAGAUUAGCCAAAGAUGG .(((((((.((......))..))))))).............(((......)))........ (-14.30 = -14.30 + -0.00)
| Location | 15,425,079 – 15,425,140 |
|---|---|
| Length | 61 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 99.34 |
| Shannon entropy | 0.01183 |
| G+C content | 0.49344 |
| Mean single sequence MFE | -12.22 |
| Consensus MFE | -12.22 |
| Energy contribution | -12.22 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.18 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.979919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15425079 61 - 24543557 CCAUCUUUGGCUAAUCUGCCCUCUUCUUAUCGUCUGCACCUUUGCUGCUUCACGGUGCAAU ........(((......)))..............((((((.............)))))).. ( -12.22, z-score = -2.20, R) >droSim1.chr3L 14762221 61 - 22553184 CCAUCUUUGGCUAAUCUGCCCUCUUCUUAUCGUCUGCACCUUUGCUGCUUCACGGUGCAAU ........(((......)))..............((((((.............)))))).. ( -12.22, z-score = -2.20, R) >droSec1.super_0 7531340 61 - 21120651 CCAUCUUUGGCUAAUCUGCCCUCUUCUUAUCGUCUGCACCUUUGCUGCUUCACGGUGCAAU ........(((......)))..............((((((.............)))))).. ( -12.22, z-score = -2.20, R) >droEre2.scaffold_4784 17681216 60 - 25762168 CCAUC-UUGGCUAAUCUGCCCUCUUCUUAUCGUCUGCACCUUUGCUGCUUCACGGUGCAAU .....-..(((......)))..............((((((.............)))))).. ( -12.22, z-score = -2.12, R) >droYak2.chr3L 17939220 61 - 24197627 CCAUCUUUGGCUAAUCUGCCCUCUUCUUAUCGUCUGCACCUUUGCUGCUUCACGGUGCAAU ........(((......)))..............((((((.............)))))).. ( -12.22, z-score = -2.20, R) >consensus CCAUCUUUGGCUAAUCUGCCCUCUUCUUAUCGUCUGCACCUUUGCUGCUUCACGGUGCAAU ........(((......)))..............((((((.............)))))).. (-12.22 = -12.22 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:50 2011