| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,417,481 – 15,417,576 |
| Length | 95 |
| Max. P | 0.944475 |
| Location | 15,417,481 – 15,417,576 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 55.82 |
| Shannon entropy | 0.78548 |
| G+C content | 0.51207 |
| Mean single sequence MFE | -30.13 |
| Consensus MFE | -10.02 |
| Energy contribution | -10.67 |
| Covariance contribution | 0.65 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15417481 95 - 24543557 UUAUUUUAGAAAUUUUACAC-----CUUUUAUUGAAUUAUGCAAUAUUUGUUGCGCCCCGGGAUG-GGCGUAGUU-CCCCCC-GGCAGCGGGUAAUUGCUAUU--- ......(((.....((((.(-----(..............(((((....)))))((.(((((..(-((.......-))))))-))..))))))))...)))..--- ( -23.90, z-score = -0.25, R) >droSim1.chrU 5450159 86 - 15797150 ------------UUACAUACGAC--UUUUUGCGCCCGUGCAGAAUGUUUCUCCCGUUACAGGUUGUAGCGUCAUU--CUCAC-CGCGGCGGGUGGUCGUUUUC--- ------------......(((((--(...(.((((((((.((((((.......((((((.....)))))).))))--)))).-)).)))).).))))))....--- ( -28.70, z-score = -2.34, R) >droSec1.super_432 5729 86 - 11295 ------------UUACAUACGAC--UUUUUGCGCCCGUGCAGAAUGUUUCUCCCGUUACAGGUUGUAGCGGCAUU--CUCAC-CGCGGCGGGUGGUCGUUUUC--- ------------......(((((--(...(.((((((((.((((((......(((((((.....)))))))))))--)))).-)).)))).).))))))....--- ( -32.20, z-score = -2.95, R) >droYak2.chr2L_random 2136252 89 - 4064425 ------------UUAUAGGCGAC--UUUUUGCGCCCGUGCAGAAUGUUGUUCUCGCUACAGGUUGUAGCGGCAUU--CUCAC-CGCGGCGGCGGGUCGUUUUUCUU ------------....(((((((--(..((((((..(((.(((((((......((((((.....)))))))))))--)))))-.)).))))..))))))))..... ( -33.30, z-score = -2.07, R) >droEre2.scaffold_4784 25677404 89 - 25762168 ------------UUUUAUACGAC-UUUUUUGCGCCUGUGCAGAAUGUUGCUCCCGCUACAGGUGGAAGCGGAAUUUCCCCCC-CGCGGCGGGUAAGCGUUCUU--- ------------...........-.....((((....))))(((((((...(((((..(.((.(((((.....))))).)).-.)..)))))..)))))))..--- ( -29.50, z-score = -1.06, R) >droWil1.scaffold_181019 100192 103 - 324498 CCGCACUGACAAACACUGGUAACUGAGUAGAGUUACUUAAUGAAUGGUUAUCCCUCAACGGGGUUUUGAACCCCGGGCACCCGCUUAUCAGGCGGUAGCCAUC--- ......((((...((..(((((((......)))))))...))....))))........((((((.....))))))(((..(((((.....)))))..)))...--- ( -33.20, z-score = -1.66, R) >consensus ____________UUACAUACGAC__UUUUUGCGCCCGUGCAGAAUGUUUCUCCCGCUACAGGUUGUAGCGGCAUU__CUCAC_CGCGGCGGGUGGUCGUUUUC___ ..........................(((((((....)))))))........(((((((.....))))))).............(((((.....)))))....... (-10.02 = -10.67 + 0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:48 2011