| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,417,231 – 15,417,334 |
| Length | 103 |
| Max. P | 0.651559 |
| Location | 15,417,231 – 15,417,334 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 67.37 |
| Shannon entropy | 0.54092 |
| G+C content | 0.51498 |
| Mean single sequence MFE | -32.52 |
| Consensus MFE | -17.58 |
| Energy contribution | -18.32 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.651559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15417231 103 + 24543557 -AGAACCACAGCAUGUUGGUUGUCAUAUCAAGGUGAGGUAUGCGGCAGCGAGUGCCG-AGAACCCUGAUGCAAGUGGAACUUGCGUUAACUGGCGCCCGAACAGG------- -............((((((.(((((...........(((...(((((.....)))))-...))).(((((((((.....)))))))))..))))).)).))))..------- ( -30.40, z-score = 0.18, R) >droYak2.chr2L_random 2136001 99 + 4064425 ------------AUGCUGUUCAUCAUAACUAGGUGAGCUAUGCGGCUACGAGAGUCGCCGAUACACCGCGAGAAACCAGCUCGC-UUAACUGGCGCCCGAACUGUCAGAAUU ------------..((.(((((((.......)))))))...))(((.((....)).)))........(((((.......)))))-....((((((.......)))))).... ( -31.00, z-score = -1.42, R) >droSim1.chrU 5449894 111 + 15797150 AGAACCCUAGGAAUGCUUAUCAUAUUGAUUAGGUGAGCUGUGCGGCUACGAGAGCCGUAGUAGUAGAGCGAGAAGUAGCCUCGC-UUAACUGGCGCCCGAACAGUCAGAAUU .((......((...(((((((.((.....))))))))).((((.((((((.....))))))(((.(((((((.......)))))-)).))).))))))......))...... ( -34.70, z-score = -1.55, R) >droSec1.super_432 5458 111 + 11295 AGAACCCUAGGAAUGCUUAUCAUAUUGAUUAGGUGAGCUGUGCGGCUACGAGAGCCGUAGUAGCAGAGCGAGAAGUAGACUCGC-UUAACUGGCGCCCGAACAGUCAGAAUU ....((((((.((((.......))))..))))).).(((((((((((.....))))))).)))).(((((((.......)))))-))..(((((.........))))).... ( -34.00, z-score = -1.41, R) >consensus _GAACCCUAGGAAUGCUGAUCAUAAUAACUAGGUGAGCUAUGCGGCUACGAGAGCCGUAGAAGCAGAGCGAGAAGUAAACUCGC_UUAACUGGCGCCCGAACAGUCAGAAUU ...............................((((.(((((((((((.....))))))).))))...(((((.......))))).........))))............... (-17.58 = -18.32 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:47 2011