| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,394,719 – 15,394,866 |
| Length | 147 |
| Max. P | 0.543609 |
| Location | 15,394,719 – 15,394,866 |
|---|---|
| Length | 147 |
| Sequences | 3 |
| Columns | 147 |
| Reading direction | forward |
| Mean pairwise identity | 98.64 |
| Shannon entropy | 0.01874 |
| G+C content | 0.40363 |
| Mean single sequence MFE | -22.81 |
| Consensus MFE | -22.14 |
| Energy contribution | -22.14 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15394719 147 + 24543557 ACAAAAAAAAGGAAUAAAAUAAAAAUUAGCAAUAAAAAGUAGAAAAGCGUGUUUGUUUGUUAACAAGUGCAGGACGAGAGUGAAAGAGACGGCAGUCGGCGACAGGAAAGAGAUAGGCAAAGGGAGCUGCAGAGAAUGAUGACGGAG ......................................((((.......(((((((((.((..(...(((...((....))......(((....))).)))...)..)).))))))))).......))))................. ( -22.14, z-score = -1.07, R) >droSim1.chr3L 14734683 147 + 22553184 AAAAAAAAAAGGAAUAAAAUAAAAAUUAGCAAUAAAAAGUAGAAAAGCGUGUUUGUUUGUUAACAAGUGCAGGACGAGAGUGAACGAGACGGCAGUCGGCGACAGGAAAGAGAUAGGCAAAGGGAGCUGCAGAGAAUGAUGACGGAG ......................................((((.......(((((((((.((..(...(((...((....))......(((....))).)))...)..)).))))))))).......))))................. ( -22.14, z-score = -0.92, R) >droSec1.super_0 7503815 147 + 21120651 AAAAAAAAACGGAAUAAAAUAAAAAUUAGCAAUAAAAAGUAGAAAAGCGUGUUUGUUUGUUAACAAGUGCAGGACGAGAGUGAACGAGACGGCAGUCGGCGACAGGAAAGAGAUAGGCAAAGGGAGCUGCAGAGAAUGAUGACGGAG .........((..((..........(((....)))...((((.......(((((((((.((..(...(((...((....))......(((....))).)))...)..)).))))))))).......))))........))..))... ( -24.14, z-score = -1.25, R) >consensus AAAAAAAAAAGGAAUAAAAUAAAAAUUAGCAAUAAAAAGUAGAAAAGCGUGUUUGUUUGUUAACAAGUGCAGGACGAGAGUGAACGAGACGGCAGUCGGCGACAGGAAAGAGAUAGGCAAAGGGAGCUGCAGAGAAUGAUGACGGAG ......................................((((.......(((((((((.((..(...(((...((....))......(((....))).)))...)..)).))))))))).......))))................. (-22.14 = -22.14 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:45 2011