| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,388,775 – 15,388,870 |
| Length | 95 |
| Max. P | 0.807243 |
| Location | 15,388,775 – 15,388,870 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 89.05 |
| Shannon entropy | 0.21427 |
| G+C content | 0.35710 |
| Mean single sequence MFE | -16.97 |
| Consensus MFE | -13.09 |
| Energy contribution | -13.28 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15388775 95 + 24543557 GAAAACGAAAUCAAUAUGUAUGACUGGUCGAUUGAUAUUGAACUUCUUGAACUUUGAAGUACCCAGCAACAUUGAAAUGAUACUAAUUACUAGCC .........((((..((((.((.(((((((((....)))))(((((.........)))))..)))))))))).....)))).............. ( -15.30, z-score = -1.65, R) >droAna3.scaffold_13337 5818926 88 - 23293914 -----CGAAAUCAAUACGUAUGCGAAGACGAUUGAAAUUGAACUUUGUGAACUUUGAAGGGCUCUCUGAAAUCGAAAUGAUACUAAUUACUGG-- -----....((((...((....))....(((((......(..(((((.......)))))..).......)))))...))))............-- ( -10.02, z-score = 0.63, R) >droEre2.scaffold_4784 17647141 95 + 25762168 GAAAACGAAAUCAAUAUGUAUGACUGGGCGAUUGAAAUCGAACUUCUUGAACUUUGAAGUGCUCGGCAACAUAGAAAUGAUACUAAUUACUAGCC .........((((.(((((.((.(((((((((....)))..(((((.........))))))))))))))))))....)))).............. ( -19.50, z-score = -2.42, R) >droYak2.chr3L 17905066 95 + 24197627 GAAAACGAAAUCAAUAUGUAUGACUGGGCGAUUGAAAUUGAACUUCUUGAACUUUGAAGUGCUCAGCAACAUAGAAACGAUACUAAUUACUAGCC .........(((..(((((.((.(((((((((....)))..(((((.........)))))))))))))))))).....))).............. ( -15.80, z-score = -1.40, R) >droSec1.super_0 7497948 95 + 21120651 GAAAACGAAAUCAAUAUGUAUGACUGGGCGAUUGAAAUUGAACUUCUUGAACUUUGAAGUGCCCAGCAACAUAGAAAUGAUACUAAUUACUAGCC .........((((.(((((.((.(((((((((....)))..(((((.........))))))))))))))))))....)))).............. ( -20.60, z-score = -3.53, R) >droSim1.chr3L 14728834 95 + 22553184 GAAAACGAAAUCAAUAUGUAUGACUGGGCGAUUGAAAUUGAACUUCUUGAACUUUGAAGUGCCCAGCAACAUAGAAAUGAUACUAAUUACUAGCC .........((((.(((((.((.(((((((((....)))..(((((.........))))))))))))))))))....)))).............. ( -20.60, z-score = -3.53, R) >consensus GAAAACGAAAUCAAUAUGUAUGACUGGGCGAUUGAAAUUGAACUUCUUGAACUUUGAAGUGCCCAGCAACAUAGAAAUGAUACUAAUUACUAGCC .........((((.(((((.((.(((((((((....)))..(((((.........))))))))))))))))))....)))).............. (-13.09 = -13.28 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:43 2011