| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,291,414 – 5,291,505 |
| Length | 91 |
| Max. P | 0.761237 |
| Location | 5,291,414 – 5,291,505 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 59.43 |
| Shannon entropy | 0.70617 |
| G+C content | 0.43650 |
| Mean single sequence MFE | -23.37 |
| Consensus MFE | -6.74 |
| Energy contribution | -7.29 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761237 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5291414 91 - 23011544 UUCCAAUUGCGG--UACUGUUGCU--GUACGG-CGAUUACAAAUGCAUUCC-GCUUAUCACUGCCGAUAAGUGCCACCAAUUUGUA-AGUAUGUAUGU------------- ......((((.(--(((.......--)))).)-)))((((((((......(-(((((((......))))))))......)))))))-)..........------------- ( -25.20, z-score = -1.70, R) >droEre2.scaffold_4929 5372308 91 - 26641161 UACCAAGUGCGG--UUCCGUUGCC--CCACUG-CGAUUACGAAUGCACUCC-GCUUAUCGCAACCGAUAAGUGCCACCAAUUGGAG-CAUAAGUAUGU------------- .....((((.((--(......)))--.)))).-....(((..((((....(-((((((((....)))))))))(((.....))).)-)))..)))...------------- ( -25.50, z-score = -1.89, R) >droAna3.scaffold_12916 6311269 97 + 16180835 UUCCAAUGAAGGCUUAUCGCUUUU--GGCCUG-CGAUUAUGAAUGCAUUUC-GCUUAUCACUCCCGAUAAGUGCCACCAAUUUGUA-CAUGAAUACAUGUGU--------- .......((((((.....))))))--((((((-(((..(((....))).))-)).((((......)))))).))).........((-((((....)))))).--------- ( -21.70, z-score = -1.07, R) >dp4.chr4_group3 7099039 92 - 11692001 CUACGACUGUGGGUCCCUCUCUCUAGGUAUAGUCGAUUACGAAUGCAUUCC-GCUUAUCACUCUCGAUAAGUGCCACCAAUUUGUA-UAUGCAU----------------- ...((((((((....(((......)))))))))))..(((((((......(-(((((((......))))))))......)))))))-.......----------------- ( -24.00, z-score = -2.24, R) >droPer1.super_1 8552930 92 - 10282868 CUACGGCUGUGGGUCCCUCUCUCUAUGUACAGUCGAUUACGAAUGCAUUCC-GCUUAUCACUCUCGAUAAGUGCCACCAAUUUGUA-UAUGCAU----------------- ...((((((((.((..........)).))))))))..(((((((......(-(((((((......))))))))......)))))))-.......----------------- ( -24.70, z-score = -2.58, R) >droWil1.scaffold_180772 639036 108 + 8906247 UUAUAUCUACC--UUUCUCACUCUAUGUCUGG-UGAUUACAAAUGCAUUUUGGCUUAUCAUCGUUUGCUGACGGUUUUGAUAAGUAUUACGACUUCACCCCGUCCAUUUAU ...........--.................((-(((...((((.....))))(((((((((((((....)))))...)))))))).........)))))............ ( -19.10, z-score = -1.31, R) >consensus UUACAACUGCGG_UUACUCUCUCU__GUACAG_CGAUUACGAAUGCAUUCC_GCUUAUCACUCCCGAUAAGUGCCACCAAUUUGUA_UAUGAAUA__U_____________ .....................................(((((((........(((((((......))))))).......)))))))......................... ( -6.74 = -7.29 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:42 2011