| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,382,924 – 15,383,030 |
| Length | 106 |
| Max. P | 0.700369 |
| Location | 15,382,924 – 15,383,030 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 91.69 |
| Shannon entropy | 0.14967 |
| G+C content | 0.42024 |
| Mean single sequence MFE | -25.46 |
| Consensus MFE | -20.68 |
| Energy contribution | -21.32 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15382924 106 - 24543557 UUUCUUCCCACAGAAAAUGAGGGAAAAGGGCAUUUCCCCGCCCUCGAUUAACUUUUUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCAGUUGUUGCUUGG ..........(((((((((((((....(((......))).)))))).........)))))))................(((((..((((.....))))..))))). ( -25.80, z-score = -1.82, R) >droSim1.chr3L 14723048 106 - 22553184 UUUCUUCCCACAGAAAAUGAGGGAAAAGGGCAUUUUCCCGCCCUCGUUGAACUUUUUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCAGUUGUUGCUUGG ..........(((((((((((((....(((......))).))))))))(((......))).....)))))........(((((..((((.....))))..))))). ( -27.60, z-score = -2.08, R) >droSec1.super_0 7492226 106 - 21120651 UUUCUUCCCACAGAAAAUGAGGCAAAAGGGCAUUUUCCCGCCCUCGUUGAACUUUUUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCAGUUGUUGCUUGG ..........(((((((.(((.(((.(((((........)))))..)))..))).)))))))................(((((..((((.....))))..))))). ( -26.20, z-score = -2.24, R) >droYak2.chr3L 17898984 105 - 24197627 UUUCUUCGCCCAGAAAAUGAGGGAAAUGGCCAUUUCCCCACCCUCGUUGAAC-UUUUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCAGUUGUUGCUUGA .......(..(((((((((((((...(((........)))))))))))(((.-....))).....)))))..)....((((((..((((.....))))..)))))) ( -24.50, z-score = -1.98, R) >droEre2.scaffold_4784 17641425 103 - 25762168 UUUCUUCCC-CAGAAAA-GGGGAAAAUGGGCAUUUCCCCACCCUCUUUCCAG-UUUUUUCUGCCUCUCUGCACAUAAUCAAGUUUCAAUUUCCAGUUGUUGCUUGC .........-(((((((-(.(((((..(((..........)))..)))))..-.))))))))................(((((..((((.....))))..))))). ( -23.20, z-score = -1.31, R) >consensus UUUCUUCCCACAGAAAAUGAGGGAAAAGGGCAUUUCCCCGCCCUCGUUGAACUUUUUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCAGUUGUUGCUUGG ..........(((((((((((((....(((......))).)))))).........)))))))................(((((..((((.....))))..))))). (-20.68 = -21.32 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:41 2011