| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,375,176 – 15,375,266 |
| Length | 90 |
| Max. P | 0.950748 |
| Location | 15,375,176 – 15,375,266 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 94.44 |
| Shannon entropy | 0.09654 |
| G+C content | 0.40889 |
| Mean single sequence MFE | -24.50 |
| Consensus MFE | -19.66 |
| Energy contribution | -20.50 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15375176 90 + 24543557 GAUUGUUGUUUCAAUUACAAAAGAUCACAGCUGAGGGUGGGAAACUUCAAAAGAGGCGAUACAAGGAAUUGGUCUUUUGUGACGGAAUGG .........(((..(((((((((((((...((....(((.....((((....))))...)))..))...)))))))))))))..)))... ( -21.90, z-score = -1.68, R) >droEre2.scaffold_4784 17633619 90 + 25762168 GAUUGUUGUUUCAAUUACAAAAGAUCACAGCUGAGGGAGGGCAACUUCAAAGGAGGCAAUACAAGGAAUCGGUCUUUUGUGAUGGAAUGG .....(..(((((.((((((((((((...(((....((((....))))......))).......(....))))))))))))))))))..) ( -26.70, z-score = -3.40, R) >droYak2.chr3L 17890954 90 + 24197627 GAUUGUUGUUUCAAUUACAAAAGAUCUCGGCUGAGGGAGGGAAACUUCAAAAGAGGCAAUACAAGGAAUCGGUCUUUUGUGAUGGAAUGG .....(..(((((.((((((((((((...(((....((((....))))......))).......(....))))))))))))))))))..) ( -26.50, z-score = -3.23, R) >droSec1.super_0 7484452 90 + 21120651 GAUUGUUGUUUAAAUUACAAAAGAUGACAGCCGAGGGAGGGAAACUUCAAAAGAGGCAAUACAAGGAAUUGGUCUUUUGUGACGGAAUGG .....(..(((...(((((((((((....(((....((((....))))......)))....(((....))))))))))))))..)))..) ( -25.50, z-score = -3.94, R) >droSim1.chr3L 14715326 90 + 22553184 GAUUGUUGUUUCAAUUACAAAAGAUCACAGCUGAGGGUGGGAAACUUCAAAAGAGGCAAUACAAGGAAUUGGUCUUUUGUGACGGAAUGG .........(((..(((((((((((((...((....(((.....((((....))))...)))..))...)))))))))))))..)))... ( -21.90, z-score = -1.77, R) >consensus GAUUGUUGUUUCAAUUACAAAAGAUCACAGCUGAGGGAGGGAAACUUCAAAAGAGGCAAUACAAGGAAUUGGUCUUUUGUGACGGAAUGG .....(..((((..(((((((((((....(((....((((....))))......)))....(((....)))))))))))))).))))..) (-19.66 = -20.50 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:40 2011