| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,366,212 – 15,366,306 |
| Length | 94 |
| Max. P | 0.844798 |
| Location | 15,366,212 – 15,366,306 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 90.19 |
| Shannon entropy | 0.19192 |
| G+C content | 0.47756 |
| Mean single sequence MFE | -20.37 |
| Consensus MFE | -17.07 |
| Energy contribution | -17.10 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.844798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15366212 94 - 24543557 AAUAAAGUGCACGCCAAAAGCUGUACAAUUUACAUUUCUUACAUUUGCAGUUGGUGCCGCACUCAGCCCCUAUCUGAAUUUUCCUACCCCCUCC ......((((.(((((...((((((.(((.((.......)).))))))))))))))..))))((((.......))))................. ( -17.30, z-score = -2.06, R) >droSim1.chr3L 14705868 94 - 22553184 AAUAAAGUGCACGCCAAAAGCUGCACAAUUUACAUUUCUUACAUUUGCAGUUGGUGCCGCACUCAGCCCCUGUCUGAAUUUUCCGACCGCCCCC .....(((((.(((((...((((((.(((.((.......)).))))))))))))))..)))))..((....(((.((....)).))).)).... ( -20.70, z-score = -1.74, R) >droSec1.super_0 7475589 93 - 21120651 AAUAAAGUGCACGCCAAAAGCUGCACAAUUUACAUUUCUUACAUUUGCAGUUGGUGCCGCACUCAGCCCCUGUCUGAAUUUUCCGACCGCCCC- .....(((((.(((((...((((((.(((.((.......)).))))))))))))))..)))))..((....(((.((....)).))).))...- ( -20.70, z-score = -1.67, R) >droYak2.chr3L 17881904 91 - 24197627 AAUAAAGUGCACGCCAAAAGCUGCACAAUUUACAUUUCUUACAUUUGCAGUUGGUGCCGCACUCAGCCCCUGUCUGAAUUUUCCGACCCCC--- .....(((((.(((((...((((((.(((.((.......)).))))))))))))))..)))))........(((.((....)).)))....--- ( -20.40, z-score = -2.12, R) >droEre2.scaffold_4784 17624855 93 - 25762168 AAUAAAGUGCACGCCAGAAGCUGCACAAUUUACAUUUCUUACAUUUGCAGUUGGUGCCGCACUCAGCCCCUGUCUGCAUUUUCCGACCGCCCC- ......(((((.((.....)))))))....................((.(((((....(((..(((...)))..))).....))))).))...- ( -21.80, z-score = -1.50, R) >droAna3.scaffold_13337 5658761 92 + 23293914 AAUAAAGUGCACGCCAAAAGCUGCACAAUUUACAUUUCUUACAUUUGCAGUUGGUACUGCACUCAGUGCCC--CAAAGCACCCCUAGCACCCCA .....((((((.((((...((((((.(((.((.......)).)))))))))))))..))))))..((((..--....))))............. ( -21.30, z-score = -1.92, R) >consensus AAUAAAGUGCACGCCAAAAGCUGCACAAUUUACAUUUCUUACAUUUGCAGUUGGUGCCGCACUCAGCCCCUGUCUGAAUUUUCCGACCGCCCC_ .....(((((.(((((...((((((.(((.((.......)).))))))))))))))..)))))............................... (-17.07 = -17.10 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:38 2011