Locus 7525

Sequence ID dm3.chr3L
Location 15,364,980 – 15,365,065
Length 85
Max. P 0.768558
window10366

overview

Window 6

Location 15,364,980 – 15,365,065
Length 85
Sequences 6
Columns 86
Reading direction reverse
Mean pairwise identity 75.33
Shannon entropy 0.47078
G+C content 0.51375
Mean single sequence MFE -27.13
Consensus MFE -14.41
Energy contribution -16.05
Covariance contribution 1.64
Combinations/Pair 1.27
Mean z-score -1.59
Structure conservation index 0.53
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.63
SVM RNA-class probability 0.768558
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15364980 85 - 24543557
UUUGCUCAGUGCUCUAGUUAACAUGCUGUGGCAGUGGCUUCUA-AGCCACGAAGAAGCUGAGCUGAACAGUUCUCAAACUGAGCCU
...((((((((((.((((......)))).))).((((((....-))))))......)))))))....(((((....)))))..... ( -31.40, z-score =  -2.05, R)
>droSim1.chr3L 14704621 85 - 22553184
UUUGCUCAGUGCUCUAGUUAACAUGCUGUGGCAGUGGCUCCUA-AGCCACGAAGAAGCUGAGCUGAACAGUUCUCAAACUGAGCCU
...((((((((((.((((......)))).))).((((((....-))))))......)))))))....(((((....)))))..... ( -31.30, z-score =  -2.11, R)
>droSec1.super_0 7474380 85 - 21120651
UUUGCUCAGUGCUCUAGUUAACAUGCUGUGGCAGUGGCUCCUA-AGCCACGAAGAAGCUGAGCUGAACAGUUCUCAAACUGAGCCU
...((((((((((.((((......)))).))).((((((....-))))))......)))))))....(((((....)))))..... ( -31.30, z-score =  -2.11, R)
>droYak2.chr3L 17880711 84 - 24197627
UUUUUUCAGUGUUCUAGUUAACAUGCUGUGGCACAGACUCCUA-AGCCACGAAGAAGCUGAGCUGAACAGUUCUC-AACUGAGCCU
.((((((.(((((......)))))...(((((..((....)).-.)))))))))))(((.((.(((.......))-).)).))).. ( -21.40, z-score =  -0.33, R)
>droEre2.scaffold_4784 17623710 84 - 25762168
UUCGUUCAGUGUUCUAGUUAACAUGCUGUGGCAGAGGCUCCUA-AGCCACGAAGAAGCUGAGCUGAACAGUUCUC-AACUGAGCCU
((((((((((.(((((((......)))(((((..((....)).-.)))))..))))))))))).)))..((((..-....)))).. ( -26.80, z-score =  -1.18, R)
>droMoj3.scaffold_6680 7849500 70 - 24764193
UCCACUCCACUCUCCUGCUCACCUGCCGCCGCUGCCUCCUCUGCCACCUCCGAGGAGGCGGUCCAGUCAA----------------
................((......))....(((((((((((..........)))))))))))........---------------- ( -20.60, z-score =  -1.77, R)
>consensus
UUUGCUCAGUGCUCUAGUUAACAUGCUGUGGCAGUGGCUCCUA_AGCCACGAAGAAGCUGAGCUGAACAGUUCUC_AACUGAGCCU
...(((((((((..((((......))))..))...((((.....))))........)))))))....(((((....)))))..... (-14.41 = -16.05 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:37 2011