| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,344,742 – 15,344,860 |
| Length | 118 |
| Max. P | 0.500000 |
| Location | 15,344,742 – 15,344,860 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 78.17 |
| Shannon entropy | 0.42225 |
| G+C content | 0.42711 |
| Mean single sequence MFE | -27.88 |
| Consensus MFE | -13.05 |
| Energy contribution | -13.95 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 15344742 118 - 24543557 AAACAGUUUUCCGGGUGGUCGUACAACCGAAAGGAAGUGGUAUUGCACAACCGCAGGAAGGGACAGGAAGUUAUACUUUAUAUGCGAUCACAGAUAUCAGCAGGUGUUAAAAGUAAAU ..............(((((((((...((....))..(((((........)))))..((((.(((.....)))...))))...))))))))).((((((....)))))).......... ( -29.30, z-score = -1.93, R) >droAna3.scaffold_13337 5637601 90 + 23293914 AAACAGUCUACUGGGUGGCCAAAAAACGGAGAGGAAAUGGUCUUCUAGGCACUUGGGAAGAUACAGGAAAUAAUAUCAGACAUCAGAUAU---------------------------- .....((((.(((((.(((((.....(.....)....))))).)))))...((((........))))..........)))).........---------------------------- ( -18.60, z-score = -1.20, R) >droEre2.scaffold_4784 17603384 115 - 25762168 AAACAGUCUUCAGGGUGGUCAUAUAACCGAAAGGAAGUGGUAUUGCACAACCGCAGG-AGGGACAGGAAGUUAUACUUUAUAUGCGAUCAG--AUAUGUGCAGGUGUGAAAAGCAAAU .....((((((...(((((.......((....))..(((......))).)))))..)-).))))......(((((((((((((((.....)--.)))))).))))))))......... ( -27.50, z-score = -1.29, R) >droYak2.chr3L 17855644 116 - 24197627 AAACAGUCUUCCGGGUGGUCGUGUAACCGAAAGGAAGUGGUAUUGCACAGCCGCAGAAAGGGACAGGAAGUUAUACUUUAUAUGCGAUCAG--AUAUCUGCAGGUGUGAAAAGUAAAU .....(((((....(((((.((((((((....))........)))))).))))).....))))).........((((((.(((((...(((--....)))...))))).))))))... ( -31.20, z-score = -1.80, R) >droSec1.super_0 7454078 116 - 21120651 AAACAGUCUACCGGGUGGUCAUGCAACCGAAAGGAAGUGGUAUUGCACAACCGCAGGAAGGGACAGGAAGUUAUAAUUUAUAUGCGAUCAC--AUAUCAGCAGGUGUGAAAAGUAAAU .....((((.((..(((((..(((((((....))........)))))..))))).))...))))..................(((..((((--((........))))))...)))... ( -30.10, z-score = -2.16, R) >droSim1.chr3L 14683520 116 - 22553184 AAACAGUCUUCCGGGUGGUCAUGCAACCAAAAGGAAGUGGUAUAGCACAACCGCAGGAAGGGACAGGAAGUUAUACUUUAUAUGCGAUCAC--AUAUCAGCAGGUGUGAAAAGUAAAU ......((((((..(((((..(((.((((........))))...)))..))))).)))))).....((((.....))))...(((..((((--((........))))))...)))... ( -30.60, z-score = -2.37, R) >consensus AAACAGUCUUCCGGGUGGUCAUACAACCGAAAGGAAGUGGUAUUGCACAACCGCAGGAAGGGACAGGAAGUUAUACUUUAUAUGCGAUCAC__AUAUCAGCAGGUGUGAAAAGUAAAU ..((...(((((...((((......))))...)))))..))..........((((.((((.(((.....)))...))))...))))................................ (-13.05 = -13.95 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:36 2011