| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,323,225 – 15,323,277 |
| Length | 52 |
| Max. P | 0.996886 |
| Location | 15,323,225 – 15,323,277 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 79.42 |
| Shannon entropy | 0.33689 |
| G+C content | 0.46359 |
| Mean single sequence MFE | -19.72 |
| Consensus MFE | -10.82 |
| Energy contribution | -10.70 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.21 |
| Mean z-score | -3.60 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.00 |
| SVM RNA-class probability | 0.996886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15323225 52 - 24543557 UGACUCGAAUCGAGGCGAUUCAGUUGGAUCGG-----CUGAGAUUUGAGAUGGAAGG ...((((((((.((.((((((....)))))).-----))..))))))))........ ( -20.70, z-score = -4.15, R) >droYak2.chr3L 17833623 51 - 24197627 UGACUCGAAUCGAGGCGAUUCAGUUGGAUCGG-----CUGAGAUUUGAGUUGAAGG- .((((((((((.((.((((((....)))))).-----))..)))))))))).....- ( -23.00, z-score = -4.99, R) >droEre2.scaffold_4784 17581369 51 - 25762168 UGACUCGAAUAGAGACGAUUCAGUUGGAUCGG-----CUGAGAUUUGAGCUGAAGG- ...(((((((..((.((((((....)))))).-----))...))))))).......- ( -14.10, z-score = -1.90, R) >dp4.chrXR_group6 12883971 56 + 13314419 UGACUCGAGUCGAGUCGAUUCGAUUGGAUUGGAUUGACUAAGAUUCGAAUGGAAUG- ....(((((((.((((((((((((...))))))))))))..)))))))........- ( -20.40, z-score = -3.48, R) >droPer1.super_12 1302364 56 + 2414086 UGACUCGAGUCGAGUCGAUUCGAUUGGAUUGGAUUGACUAAGAUUCGAAUGGAAUG- ....(((((((.((((((((((((...))))))))))))..)))))))........- ( -20.40, z-score = -3.48, R) >consensus UGACUCGAAUCGAGGCGAUUCAGUUGGAUCGG_____CUGAGAUUUGAGUUGAAGG_ ...((((((((....((((((....))))))..........))))))))........ (-10.82 = -10.70 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:33 2011