| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,315,296 – 15,315,360 |
| Length | 64 |
| Max. P | 0.859169 |
| Location | 15,315,296 – 15,315,360 |
|---|---|
| Length | 64 |
| Sequences | 4 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 90.10 |
| Shannon entropy | 0.15905 |
| G+C content | 0.43527 |
| Mean single sequence MFE | -16.20 |
| Consensus MFE | -14.19 |
| Energy contribution | -14.75 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15315296 64 + 24543557 CAGAUCGAUCAUAUGGAUCGAAAUUCUGUCAGUUCUGUCCAGAUAUUUCUCCUAUUCAGACGGC ((((((((((.....))))))...))))......(((((..((((.......))))..))))). ( -14.70, z-score = -0.75, R) >droEre2.scaffold_4784 17573498 64 + 25762168 CAGAUCGAUCCUAUGGAUCGAAAUUCUGUCAGUGCCGUCCAGAUACUUUUCCCAUUCGGACGAC (((((((((((...)))))))...)))).......(((((.((............))))))).. ( -18.40, z-score = -1.87, R) >droYak2.chr3L 17825520 63 + 24197627 CAGAUCGAUCAUAUGGAUCGAAACUCUGUCAGUUAUGUCCAGAUACUU-UCCUAUUCGGACGAC ((((((((((.....))))))...)))).......(((((..(((...-...)))..))))).. ( -17.00, z-score = -1.56, R) >droSim1.chr3L 14653312 64 + 22553184 CAGAUCGAUCAUAUGGAUCGAAAUUCUGUCAGUUCUGUCCAGAUAUUUCUUCUAUUCAGACGGC ((((((((((.....))))))...))))......(((((..((((.......))))..))))). ( -14.70, z-score = -0.84, R) >consensus CAGAUCGAUCAUAUGGAUCGAAAUUCUGUCAGUUCUGUCCAGAUACUUCUCCUAUUCAGACGAC ((((((((((.....))))))...)))).......(((((.((((.......)))).))))).. (-14.19 = -14.75 + 0.56)
| Location | 15,315,296 – 15,315,360 |
|---|---|
| Length | 64 |
| Sequences | 4 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 90.10 |
| Shannon entropy | 0.15905 |
| G+C content | 0.43527 |
| Mean single sequence MFE | -17.18 |
| Consensus MFE | -15.56 |
| Energy contribution | -15.12 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859169 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15315296 64 - 24543557 GCCGUCUGAAUAGGAGAAAUAUCUGGACAGAACUGACAGAAUUUCGAUCCAUAUGAUCGAUCUG ....((((..(((((....).))))..)))).....((((...((((((.....)))))))))) ( -14.60, z-score = -0.95, R) >droEre2.scaffold_4784 17573498 64 - 25762168 GUCGUCCGAAUGGGAAAAGUAUCUGGACGGCACUGACAGAAUUUCGAUCCAUAGGAUCGAUCUG ((((((((.(((.......))).)))))))).....((((...(((((((...))))))))))) ( -23.40, z-score = -2.95, R) >droYak2.chr3L 17825520 63 - 24197627 GUCGUCCGAAUAGGA-AAGUAUCUGGACAUAACUGACAGAGUUUCGAUCCAUAUGAUCGAUCUG ...(((((.(((...-...))).)))))........((((...((((((.....)))))))))) ( -15.60, z-score = -0.86, R) >droSim1.chr3L 14653312 64 - 22553184 GCCGUCUGAAUAGAAGAAAUAUCUGGACAGAACUGACAGAAUUUCGAUCCAUAUGAUCGAUCUG ....((((..(((((....).))))..)))).....((((...((((((.....)))))))))) ( -15.10, z-score = -1.67, R) >consensus GCCGUCCGAAUAGGAGAAAUAUCUGGACAGAACUGACAGAAUUUCGAUCCAUAUGAUCGAUCUG ...((((..(((.......)))..))))........((((...((((((.....)))))))))) (-15.56 = -15.12 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:33 2011