| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,305,018 – 15,305,132 |
| Length | 114 |
| Max. P | 0.899293 |
| Location | 15,305,018 – 15,305,132 |
|---|---|
| Length | 114 |
| Sequences | 8 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 78.97 |
| Shannon entropy | 0.40468 |
| G+C content | 0.49834 |
| Mean single sequence MFE | -30.25 |
| Consensus MFE | -20.67 |
| Energy contribution | -20.81 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.899293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15305018 114 - 24543557 GCAAGUCCAUCUUCUCCGUGGAG-UUGGACGCCAAACAGUCGCCAGUUGUUUCGUCUUCGUCUUGUGGUUACACAAAUCUCCAGACUGGCAUCAAAAGCAGCACCAGUAGUUCAA ((..(((((.((((.....))))-.)))))(((((((((.(....))))))).((((..(..(((((....)))))..)...)))).))).......))................ ( -30.60, z-score = -1.90, R) >droSim1.chr3L 14642940 114 - 22553184 GCAAGUCCAUCUUCUCCGUGGAG-UUGGACGCCAAACAGUCGCCAGUUGUUUCGUCUUCGUCUUGUGGUUACACAAAUCUCCAGACUGGCAUCAAAAGCAGCACCAGUAGUUCAA ((..(((((.((((.....))))-.)))))(((((((((.(....))))))).((((..(..(((((....)))))..)...)))).))).......))................ ( -30.60, z-score = -1.90, R) >droSec1.super_0 7413987 114 - 21120651 GCAAGUCCAUCUUCUCCGUGGAG-UUGGACGCCAAACAGUCGCCAGUUGUUUCGUCUUCGUCUUGUGGUUACACAAAUCUCCAGACUGGCAUCAAAAGCAGCACCAGUAGUUCAA ((..(((((.((((.....))))-.)))))(((((((((.(....))))))).((((..(..(((((....)))))..)...)))).))).......))................ ( -30.60, z-score = -1.90, R) >droYak2.chr3L 17814878 114 - 24197627 CCAAGUCCAUCUUCUCCGUGGAG-UUGGACGCCAAACAGUCGCCAGUUGUUUCGUCUUCGUCUUGUGGUUACACAAAUCUCCAGACUGGCAUCAAAACCAGCACCAGUAGUUCAA ....(((((.((((.....))))-.)))))(((((((((.(....))))))).((((..(..(((((....)))))..)...)))).)))......................... ( -28.20, z-score = -1.60, R) >droEre2.scaffold_4784 17563297 114 - 25762168 UCCAGUCCAUCUCCGCCGUGGAG-UUGGACGCCAGGCAGUCGCCAGUUGUUUCGUCUUCGUCUUGUGGUUACACAAAUCUCCAGACUGGCAUCAAAUCCAGCACCAGUAGUUCAA ....(((((.((((.....))))-.)))))(((((((....))).........((((..(..(((((....)))))..)...))))))))......................... ( -33.60, z-score = -2.35, R) >droAna3.scaffold_13337 5599653 111 + 23293914 AAGAGUCCAUCUUCUCUGAGGAGAUGGGACGCCAAACAGUCGCCAGUUGUUUCGUCUUCGUCUUGUGGUUACACAAAUCUCCAGACUGGCAUCACAACCAACAGCAGAACC---- ......((((((((.....))))))))(((........)))(((((((....((....))..(((((....))))).......))))))).....................---- ( -30.00, z-score = -0.74, R) >dp4.chrXR_group6 12865522 90 + 13314419 ACUGAUCCAGUUCUGGUAAGGAGAUGGGUCGCCAAACAGUCGCCAGUUGUU------UCGGCUUGUGGUUGGACAAAUCUCUAGACUGGCAUCAAC------------------- ..(((((((((.((.....((((((..(((((((...(((((.........------.)))))..))))..)))..))))))))))))).))))..------------------- ( -29.20, z-score = -1.44, R) >droPer1.super_12 1285263 90 + 2414086 ACUGAUCCAGUUCUGGUAAGGAGAUGGGUCGCCAAACAGUCGCCAGUUGUU------UCGGCUUGUGGUUGGACAAAUCUCUAGACUGGCAUCAAC------------------- ..(((((((((.((.....((((((..(((((((...(((((.........------.)))))..))))..)))..))))))))))))).))))..------------------- ( -29.20, z-score = -1.44, R) >consensus ACAAGUCCAUCUUCUCCGUGGAG_UUGGACGCCAAACAGUCGCCAGUUGUUUCGUCUUCGUCUUGUGGUUACACAAAUCUCCAGACUGGCAUCAAAACCAGCACCAGUAGUUCAA ....((((..((((.....))))...))))...........(((((((...........(..(((((....)))))..)....)))))))......................... (-20.67 = -20.81 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:31 2011