| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,288,421 – 5,288,521 |
| Length | 100 |
| Max. P | 0.526591 |
| Location | 5,288,421 – 5,288,521 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 62.15 |
| Shannon entropy | 0.72314 |
| G+C content | 0.35567 |
| Mean single sequence MFE | -18.73 |
| Consensus MFE | -7.99 |
| Energy contribution | -8.55 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.39 |
| Mean z-score | -0.65 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.526591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5288421 100 + 23011544 --UAAAAACCUUAAAUG--CCACUAUCCUCCAUCCCAAGGACUACUGUACGCAGAUUAGUUAGCACAAUAAGCUGGCUUGUUUUCAGAAACA------GUCGUUGAAUCA --...............--................(((.((((.(((....)))...(((((((.......))))))).((((....)))))------))).)))..... ( -17.60, z-score = -0.52, R) >droYak2.chr2L 8414489 94 - 22324452 ----------UAAAAUAAAUUCGAAUCCUUCUGGCCAAGGACCACUGUAUGCAGAUUAGUUAGCACAAUAAGCUGGCUUGUUUUCAGAAACA------GUCGUUGACUCA ----------..........((((.(((((......)))))(.(((((.((.((((.(((((((.......))))))).)))).))...)))------)).))))).... ( -20.30, z-score = -0.77, R) >droEre2.scaffold_4929 5368578 110 + 26641161 CAAUAUAUUUCUGAAGUACUUUAAUUCCUUCUUGCCAAGGACCACUGUAUGCAGAUUAGUUAGCACAAUAAGCUGGCUUGUUUUCAGAAACAGAAACAGUCGUUGACUCA .......((((((((((((......(((((......))))).....))))...(((.(((((((.......))))))).))))))))))).......((((...)))).. ( -22.60, z-score = -0.56, R) >droSec1.super_5 3367357 98 + 5866729 --UAACAUUUUUAA-----UUGCUAUCAUUUUUCCCAAGGAAUACUGUACGCAGAUUAGUUAGCACAAUAAGCUGGCUUGUUUUCAGAAAUGU-----AUCGUUGACUCA --..((((((((..-----.(((...((...((((...))))...))...)))(((.(((((((.......))))))).)))...))))))))-----............ ( -18.60, z-score = -0.84, R) >droSim1.chr2L 5090519 103 + 22036055 --UAACAUUUUUACAUUUUUUGCUAUCCUUCUUCCCAAGGACUACUGUACGCAGAUUAGUUAGCACAAUAAGCUGGCUUGUUUUCAGAAAUGU-----AUCGUUGACUCA --...((....(((((((((((((((((((......)))))...(((....)))......))))).((((((....))))))...))))))))-----)....))..... ( -21.00, z-score = -1.52, R) >droMoj3.scaffold_6500 15362826 92 + 32352404 GAGCAAAUUUACGUAGAUUGUGCUAUCUGUAAGGGCGUAAUUUAAGGUAAAUA-AUUAAACAUUUCUACUAUUUAAUACAUGAUUAAGAAUGA----------------- ......((((((.(((((((((((.........)))))))))))..)))))).-......((((.((...(((........)))..)))))).----------------- ( -12.30, z-score = 0.32, R) >consensus __UAAAAUUUUUAAAUA__UUGCUAUCCUUCUUCCCAAGGACUACUGUACGCAGAUUAGUUAGCACAAUAAGCUGGCUUGUUUUCAGAAACA______GUCGUUGACUCA .........................(((((......)))))...(((...(((....(((((((.......))))))))))...)))....................... ( -7.99 = -8.55 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:42 2011