| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,296,217 – 15,296,313 |
| Length | 96 |
| Max. P | 0.920572 |
| Location | 15,296,217 – 15,296,313 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 68.68 |
| Shannon entropy | 0.59624 |
| G+C content | 0.42713 |
| Mean single sequence MFE | -20.61 |
| Consensus MFE | -12.81 |
| Energy contribution | -13.97 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.39 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920572 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15296217 96 - 24543557 CCGCUUUGGCUAUUCAGAAUGUUUGCUGGGGUAUUAAAAUUUUACUGCACCUUCUUGAUGCCGCCAGACAAACAGAUAUUCUACA------UAUAUAGGCAA ..((((....(((..((((((((((((((((((((((.................)))))))).)))).....))))))))))..)------))...)))).. ( -24.73, z-score = -1.92, R) >droSim1.chr3L 14634096 96 - 22553184 CCGCUUUGGCUAUUCAGAAUGUUUGCUGGGGUAUUAAAAUUUUACUGCACCUUCUUGAUGCCGCCAGACAAACAGAUAUUCCACA------UAUAUAGGCAA ..(((((((....((....((((((((((((((((((.................)))))))).)))).))))))))....)))..------.....)))).. ( -23.24, z-score = -1.26, R) >droSec1.super_0 7405284 83 - 21120651 CCGCUUUGGCUAUUCAGAAUGUUUGCUGGGGUAUUAAAAUUUUACUGCACCUUCUUGAUGCCGCCAGACAAACAGAUAGGCAA------------------- .....(((.(((((.....((((((((((((((((((.................)))))))).)))).))))))))))).)))------------------- ( -24.93, z-score = -2.25, R) >droYak2.chr3L 17805535 102 - 24197627 CCGCUUGGGCUAUUCACAAUGUUUGCUGGGGUAUUAAAAUUUUACUGCACCUUCUUGAUGCCGCCAGACAAACAGAUAUUCCACAUACGAGUAUAUGGGCAA ..((((((..((((.....((((((((((((((((((.................)))))))).)))).))))))))))..)))((((......))))))).. ( -27.43, z-score = -1.54, R) >droEre2.scaffold_4784 17554677 94 - 25762168 -------CCGUAUUCACAGUGUUUGCU-GGGUAUUAAAAUUUUACUGCACCUUCUUGAUGCCGCCAGACAAGCAGAUAUCCCACAUACUCGUAUAUAGGCAA -------((.(((..(((((((.((..-(((((((...........(((.(.....).))).((.......)).))))))))).))))).))..)))))... ( -15.20, z-score = 0.98, R) >droAna3.scaffold_13337 5591041 90 + 23293914 CCGCCUUAUCCACACAGAAUGUUUGCUGGGGUAUUAAAAUUUUACUGCACCUACUUGAUGCCACCAGACGGCCG--UCGUCUAUA------UACACAG---- ..(((.....((.((.....)).))((((((((((((.................)))))))).))))..)))..--.........------.......---- ( -17.03, z-score = -0.09, R) >droWil1.scaffold_180955 2200046 72 + 2875958 -------AGGCGUUCCAAAUCACGGCA-AGGUAUUAAAAUUUUACUACACUCGCC---UCCUACUAGAUGCUACCAUUUGCAG------------------- -------.((((((.........(((.-(((((.(((....))).))).)).)))---........))))))...........------------------- ( -11.73, z-score = -0.68, R) >consensus CCGCUUUGGCUAUUCAGAAUGUUUGCUGGGGUAUUAAAAUUUUACUGCACCUUCUUGAUGCCGCCAGACAAACAGAUAUUCCACA______UAUAUAGGCAA ...................((((((((((((((((((.................)))))))).)))).))))))............................ (-12.81 = -13.97 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:30 2011