| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,293,132 – 15,293,238 |
| Length | 106 |
| Max. P | 0.914238 |
| Location | 15,293,132 – 15,293,238 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 62.34 |
| Shannon entropy | 0.65000 |
| G+C content | 0.32072 |
| Mean single sequence MFE | -16.94 |
| Consensus MFE | -9.44 |
| Energy contribution | -10.04 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15293132 106 - 24543557 UUAUCCAGUUGAGCUGCAGUAAAAUAAAGCAUUAGACUAUAUGUAUAAGUAGGAAAACUAUGUUAUACCAAUUGGAUGUAAUAGUUAAUCGAACUUAAGCACUCAC------ ..(((((((((.(((............)))............((((((((((.....)))).)))))))))))))))((...((((.....))))...))......------ ( -20.90, z-score = -1.27, R) >droEre2.scaffold_4784 17551600 83 - 25762168 UUAUCCAGUUGAGCUGCAGCGAAACGAAGCAUUGAACUGUAUGUUUAGGUAUGAAAACUAUUUGAUGCCAAUUGGAUA-AAUAC---------------------------- (((((((((((.((....))........((((..((..((...((((....)))).))..))..))))))))))))))-)....---------------------------- ( -23.00, z-score = -3.60, R) >droYak2.chr3L 17802457 106 - 24197627 UUAUCCAGUUGAGCUGCAGUGCAACAAAGCAAUAAACUA------UUAGUAUGAAAACUAUAUUUUACCAGAUGGAUAUAAUAAUAAAUGCAAGAUAAAUAAUAACUAUUAC (((((..((((.((....)).))))...(((........------.((((......))))((((.((((....)).)).)))).....)))..))))).............. ( -13.00, z-score = 0.29, R) >droSec1.super_0 7402196 84 - 21120651 UUAUCCAGUUGAGCUGCAGUGAAGUAAAGCAUUAGACUAUAUGUAUA----------------------AAUUGGAUGUAAUAGUGAAUCCAACUUAACCAUUCAC------ .(((((((((..(((.......)))...((((........))))...----------------------))))))))).....((((((...........))))))------ ( -13.40, z-score = -0.18, R) >droSim1.chr3L 14630998 84 - 22553184 UUAUCCAGUUGAGCUGCAGUGAAGUUAAGCAUUAGACUAUAUGUAUA----------------------AAUUGGAUGUAAUAGUUAAUUCAACUGAAGCACUCAC------ .(((((((((....((((....((((........))))...))))..----------------------)))))))))...(((((.....)))))..........------ ( -14.40, z-score = 0.19, R) >consensus UUAUCCAGUUGAGCUGCAGUGAAAUAAAGCAUUAGACUAUAUGUAUA_GUA_GAAAACUAU_U__U_CCAAUUGGAUGUAAUAGUUAAUCCAACUUAAGCACUCAC______ .((((((((((.(((............))).....((.....))........................)))))))))).................................. ( -9.44 = -10.04 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:29 2011