| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,279,570 – 15,279,626 |
| Length | 56 |
| Max. P | 0.807178 |
| Location | 15,279,570 – 15,279,626 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 94.29 |
| Shannon entropy | 0.10053 |
| G+C content | 0.37857 |
| Mean single sequence MFE | -6.17 |
| Consensus MFE | -6.46 |
| Energy contribution | -6.06 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.69 |
| Structure conservation index | 1.05 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15279570 56 + 24543557 CAACUCCUGCGCUAAAUUCACAUUUGCCAUAACUGAAAUCUGUAGGAAAUCUUACG ....(((((((.....((((.............))))...)))))))......... ( -7.22, z-score = -1.50, R) >droEre2.scaffold_4784 17540281 56 + 25762168 CCACUCCUGCGCUAAAUUCAUAUUUGCCAUAACUGAAAUCUGUGGGAAAUCUUAUG ....(((..(((.((((....))))))((....))......)..)))......... ( -6.70, z-score = -0.50, R) >droYak2.chr3L 17791482 56 + 24197627 CCACUCCUGCGCCAAAUUCAUAUUUGCCAUAACUGAAAUCUGUAGGAAAUCUUAUG ....(((((((.(((((....))))).)......(....).))))))......... ( -8.30, z-score = -1.68, R) >droSec1.super_0 7391527 56 + 21120651 CUACUUCUGCGCUAAAUUCACAUUUGCCAUAACUGAAAUCUGUAGGAAAUCUUAUG ....(((((((.....((((.............))))...)))))))......... ( -4.32, z-score = 0.12, R) >droSim1.chr3L 14620251 56 + 22553184 CUACUUCUGCGCUAAAUUCACAUUUGCCAUAACUGAAAUCUGUAGGAAAUCUUAUG ....(((((((.....((((.............))))...)))))))......... ( -4.32, z-score = 0.12, R) >consensus CCACUCCUGCGCUAAAUUCACAUUUGCCAUAACUGAAAUCUGUAGGAAAUCUUAUG ....((((((((.((((....))))))((....))......))))))......... ( -6.46 = -6.06 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:24 2011